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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctcttatcttattaaagggcttccattatatcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttag

Basic information

species Glycine max
transcript GLYMA11G10770.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G079256_T02 (Zea mays), 5'ss of exon 8
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctcttatcttattaaagggcttccattatatcac---ttcatacttccgcatatcattttatcttttacttttatgatttgtttttag-------
 || | ||||||||  ||| |||||| ||||||||||| || ||||||||||| || ||||||||||||||  | || || ||||| ||  |||| ||||| |  | |   ||  |  ||    |  || ||  | ||     ||| ||  |    |   |  |||   |  | | ||| | | |      ||        
CTGCTTGAGACATCAAGGAGAGGATACCTTGCTGCAATTTCAGCATCTAGTTATTCTTATGTTTCTTTACTTCAACACTTCCTTCCCATAATGAATCCAGgta-atattgcatactgatatgctgtgtcgatattctcttctgttcctatatgttgacgccgatttgggtgatcccttttttagtcaacactatgattttg

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G125052_T01 (Zea mays), 5'ss of exon 6
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgca--------tgtctcttatcttattaaagggcttccattatatcacttcatacttccgca----tatcattttatcttttacttttatgatttgtttttag
||||||||||||||  | | ||| |||||||| ||||| || ||||| ||||||||||||||||| || ||  ||||||| ||||| ||  ||||||| || |         |   ||      ||   ||||  | ||| ||    |  |  | ||   ||    ||    || |   |  | |||||  || | |      
TTGTTGGAGACATCAAGAAGAGGCTATCTTGCGGCAATTTCAGCATCGAGTTACTCCTATGTTTCATTGCTTCAGCATTTCCTTCCTATAATGAACCCCGgtagtcaggggcgaagctaggtagatgctagggggtgcat-atgcacccgcgaaattttacaaaactactgattcagactagatttttaccatatatgcac--

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G070422_T03 (Zea mays), 5'ss of exon 8
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGg-----catgtctcttatcttattaaag---ggcttccattatatcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttag---
|||||||| || ||  | | ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| || ||||| ||  |||| || ||     ||| |||| |||  ||| |      |||||| |  ||       ||| ||       ||  |  | |   |  ||||| |  ||| | || |    
TTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTATAATGAATCCCGgtagtgcatatctcctatgctatcatgctgtggcttctaccattatttcccatgctaagattaatactgctgttgctgcctttttt--tttctcttaaccca

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G05990.2 (Arabidopsis thaliana), 5'ss of exon 7
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctcttatcttattaaagggcttccattatatcacttcatacttccgcatatcattttatcttttacttttatgatttgtttttag
 |  ||||||||||  ||||||| ||||| ||||| || ||||| || |||||||||| |||||| || || | ||||||||| |||||  |||||||||||||||  |  || |  |  | |    |  |||   |      ||  || |  || |  || | | |  |  |||                
CTTCTGGAGACATCAAGGAAAGGCTATCTCGCTGCTATCTCTGCTTCGAGTTACTCCTTTGTTTCCTTGCTGAGGCATTTTCTGCCAATTATGAACCCAGgcatgtaacaaatttcgt--atgtctctttattccttgtaaatatgttttcttatttggttctctatgatgatttag--------------

upper sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctcttatcttattaaagggcttccattatatcacttca--tacttccgcatatcattttatcttttacttttatgattt-----gtttttag-----------------------------
 |||||||||||||  | ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||  |||  |||| ||  ||||||||||||    ||||  |  ||    |  ||    |    || | ||   |  ||| | |    | ||  | ||||||  |  | | ||     |||  |||                             
CTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTATAATGAACCCAGgcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgctattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986202|gb|BE660310.1|BE660310
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGG-ATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
EST: gi|15287567|gb|BI471458.1|BI471458
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|12773652|gb|BG238579.1|BG238579
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|209721948|gb|BW680083.1|BW680083
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|15204411|gb|BI427179.1|BI427179
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|9899327|gb|BE608295.1|BE608295
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCCTTCA-TCTCTCTGACATACATTGCTTCAGAAAGGATCATTTCT
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATC-TTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCT
EST: gi|19053059|gb|BM731726.1|BM731726
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
EST: gi|7030180|gb|AW459963.1|AW459963
EST:     TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAG                         GTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG
genomic: TTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAATCTTGAACCCAGgcatgtctct ... ttgtttttagGTGGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTG