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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTGCAGAATTGATAGGTTATGGTTTCCCCATCCTGGTGTTTTGGACGGGTCTATAACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGgtacttctagtttgaccaagtagttcccaaattgttattattgttcacttattctttagatcgactggattgatgaataacagccttagaaattttgatg...

Basic information

species Glycine max
transcript GLYMA11G09650.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g38930.1 (Oryza sativa), 5'ss of exon 6
ATGGTGCAGAATTGATAGGTTATGGTTTCCCCATCCTGGTGTTTTGGACGGGTCTATAACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGgtacttctagtttga--ccaagtagttcccaaattgttattattgttcacttattctttagatcgactggattgatgaataacagccttagaaattttgatg
|||||||||  |||||||| | ||||||   |||||||| |||||||| ||  | || || ||||||||||| ||||||||  |||||||||| ||||||||  ||  | |  ||       |  || |     |  ||  ||| || ||| ||| || | ||    ||   |  |        |    ||||||  |    
ATGGTGCAGGCTTGATAGGATGTGGTTTGGACATCCTGGAGTTTTGGAAGGAACAATGACCAGACAACCTTTCCTCTGTCCAATGGATCATGTTTTTGAGgtgattacactgggaatttttttcatttctgttatcataacattatttact-atttttcatattatatgacatactattagttggttagagaaatagtttc-

upper sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G011912_T01 (Zea mays), 5'ss of exon 6
ATGGTGCAGAATTGATAGGTTATGGTTTCCCCATCCTGGTGTTTTGGACGGGTCTATAACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGgtacttctagtttgaccaagtagttcccaaattgttattattgttcacttattctttagatcgactggattgatga-ataacagccttagaaattttgatg----
|||||||||  |||||||  | ||||||   ||||||||  |||| || ||  | || || ||||||||||||||||| ||  |||||||||| ||||||||| ||||    | |  |  |  ||    ||  |    |||||||    |||     | |  ||      |  ||  |   |||| | | | |    |       
ATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTGGAATTTTAGAGGGAACAATGACCAGACAACCTTTTCTCTGCCCACTGGATCATGTGTTTGAGgtaattctg---taagtatttccttttataacggaggctattgtttttctataaa--aaactgatatccatactgccacctcagcttcaaataacaggtcacttc

upper sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 10
ATGGTGCAGAATTGATAGGTTATGGTTTCCCCATCCTGGTGTTTTGGACGGGTCTATAACTAGACAACCTTTTCTCTGTCCTTTGGATCATGTATTTGAGgtacttctagtttgaccaag--tagttcc-caaattgttattattgttcacttattctttagatcgactggattgatgaataacagccttagaaattttgatg
|||||||||| | ||||||||||||||||| |||||||| ||| | || |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| | |  |||     |   || ||   |  | | | ||||||||| ||  ||    ||| ||   ||||  | | |  | || |      |||    |  
ATGGTGCAGATTGGATAGGTTATGGTTTCCACATCCTGGAGTTCTTGAGGGGTCTATTACTAGACAACCTTTTCTCTGCCCTTTGGACCATGTATTTGAGgtaccttttttttagttgaacctacttttgcctactctcattattgtttacccatgaggtaggtcatgtggaa-gtttagcatcatctcctttaataccta--