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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTATGTCTTGTCCTCACATAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgagtgtttggtttcacatcttgctctgaatgtattacatgagaaattaataactatag

Basic information

species Glycine max
transcript GLYMA11G09420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G09420.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
TCTATGTCTTGTCCTCACATAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatga--gtgtttggtttcacatcttgctctgaatgtattaca---tgagaaattaataactatag------
|| ||| | || || ||  | || ||||| ||  |  | ||||||| ||   |||| ||||||||||| ||||| |||||||| || ||||||||||| ||||  |  |||   | |  | ||   ||  |    |  |||   |  ||   | | || ||   ||   ||       
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcattctcacaagtttcaaatcctatttgcag

upper sequence: GLYMA11G09420.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
TCTATGTCTTGTCCTCACATAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgagtgtttggtttcacatcttgctctgaatgtattacatgagaaattaataactatag--------------------------------------
|||||| ||||||| ||  |||| |||||||   |||||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||  |  |    |||      | ||  ||| |||  ||   ||       ||| | || ||   |                                       
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaaaatttccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag