Sequence
atgc intronic sequence ATGC exonic sequenceAGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaacttgcacatttttttgtattacttctggaggatgccttaatgtatatatgttttttctcactccgaaacatgaaagttcaggttagtgaac...
Basic information
species | Glycine max |
transcript | GLYMA11G08390.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaacttgcacatttttttgta-ttacttctggaggatgccttaatgtatatatgttttttctcactccgaaacatgaaagttcag-gttagtgaac----------------------------------------------
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TGCCCAATATTACCTAATAGACTGTATAATTCAAGTTTTTCCTGACGAGTATCACTTGCAGACTCTAGATGTACTTCTTGGGGCGTGTCCTCAACTTCAGgtagtctgagtagc----tctctcgtagttagcattatgctctgctcctaatcatctaacttgattgcaactgcactgtcggggtttttggtgtcagtggttcactaacctcctgtttttttcactttctctttggttttcttctcag
upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G51310.1 (Arabidopsis thaliana), 5'ss of exon 8
AGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgt------cagtgaacttgcacattt---ttttgtat---tacttctggaggatgccttaatgtatatatgttttttctcactccgaaacatgaaagttcaggttagtgaac------------------
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TGCACAGTGCTACCTTATGGATTGCATTATTCAAGTCTTTCCTGATGATTTTCACCTTCAAACTCTCGATGTATTATTGGGAGCTTGTCCACAACTTCAGgtacttttttatgtaaccgaccacttcttttttatatgcatttttctttttaaaaaattagactgcttataaacctcatcccatcagaacatgtttctcctatttttctttttgtcattttttgttccag
upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 8
AGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaacttgcacatttttttgtattacttctggagg----atgcc-ttaatgtatatatgttttttctcactccgaaacatgaaagttcaggttagtgaac
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TGCCCAATTTTATTTGATGGATTGCATAATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGAGACATTATTGGGGGCTTGCCCCCAGCTTCAGgtgagtaa---tacggttcttattgtttttgtttcacagtttttgtgccattcccattttcacaattgttgtcagtt-ggagtatgtgattgccaacttctgta-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208082000|gb|GD879502.1|GD879502EST: ATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAG CCATCTGTGGACATCAAGACAGTACTGTCCCAGTTAATGGAAAGGCTTTCA
genomic: ATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaac ... tatttttcagCCATCTGTGGACATCAAGACAGTACTGTCCCAGTTAATGGAAAGGCTTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTCAGTTCTACTTGATGGATTGTATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTTTTGTTGGGTGCTTACCCCCAACTTCAGgtcagtgaacttgcacatttttttgtattacttctggaggatgccttaatgtatatatgttttttctcactccgaaacatgaaagttcaggttagtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcactc