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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATTGTCAATAACAGATAGTGCAAAGGATCAATCAAGCCAGTCAGACATGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcag

Basic information

species Glycine max
transcript GLYMA11G08290.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019852|gb|CX706594.1|CX706594
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|58023403|gb|CX710144.1|CX710144
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193339713|gb|FK302316.1|FK302316
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTACAAGGATTTGCTGGCGTC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGT-CAAGGATTTGCTGGCGTC
EST: gi|57574672|gb|CX547647.1|CX547647
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|6847457|gb|AW349818.1|AW349818
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|254318747|gb|GR830311.1|GR830311
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGG-TTGACCCAAATGACCCTTCTGTCAAGGATTTGCTG
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTG
EST: gi|213602700|gb|DB978115.1|DB978115
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|213597471|gb|DB981639.1|DB981639
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|214006796|gb|DB987664.1|DB987664
EST:     TCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGAGCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|254318748|gb|GR830312.1|GR830312
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|21602391|gb|BQ612722.1|BQ612722
EST:     GATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: GATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|151395379|gb|EV265250.1|EV265250
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|13479589|gb|BG508932.1|BG508932
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|208307682|gb|GE109278.1|GE109278
EST:     TAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|208301073|gb|GE097338.1|GE097338
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTNACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|22931412|gb|BU548551.1|BU548551
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|6069956|gb|AW099536.1|AW099536
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|27426751|gb|CA938271.1|CA938271
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|209715415|gb|BW684699.1|BW684699
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|37995492|gb|CF807081.1|CF807081
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193638789|gb|FK585990.1|FK585990
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193554701|gb|FK515538.1|FK515538
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC
EST: gi|193554701|gb|FK515538.1|FK515538
EST:     TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTNTGTCAAGGATTTGCTGGCGTCC
genomic: TGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaa ... ggttctgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCGTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAATTGTCAATAACAGATAGTGCAAAGGATCAATCAAGCCAGTCAGACATGAGCAAATTGTTAGCTGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgcctaataaattccatgattatttgttttgttcttttaacatagattgatctgctgtattttgtgcactaagcgataattcatgggttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT