Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcag

Basic information

species Glycine max
transcript GLYMA11G07910.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G116434_T01 (Zea mays), 5'ss of exon 8
CTAGGGGAAGAATTGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttgttactgttacatacaattgaaaccatcttttatatgcttttagtggataaattttcctgtgctctctgttgcttctttcgtcatctttcacttgattcatattctttatctgaaggaaagtttatgtaatgcttcctgttttatgcag
|| || |||||| | |  |||||  | ||    ||||| ||||||||||||||||| ||||||||| |     |  || ||   |  |||  |||      |||| ||     |  |   |   |||| ||    | |||  |||                                                                            
CTTGGTGAAGAACTTTGGTTCACAATAGGGGGGCAACATATTCCTTTTGGTGCATCACCACAGgtacatcacatatctattttctgaaataaaaatataactttacattgccctgatttgtc--ttttacttgaatttcttctgcag--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343377|gb|CO984110.1|CO984110
EST:     TTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|13791595|gb|BG654186.1|BG654186
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTNCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|192324841|gb|FK015352.1|FK015352
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|193365453|gb|FK329776.1|FK329776
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|120533133|gb|EH261266.1|EH261266
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
EST: gi|120533498|gb|EH261631.1|EH261631
EST:     TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAG                         GATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG
genomic: TGTACTTCACTGTTGGCTCACAACACATTCCTTTTGGTGCATCTCCACAGgtaaactttg ... ttttatgcagGATGTGTGGACTGAGCTTGGACGTCCCTGTGGCATTCATCAAAAGCAG