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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGGgtacattatatttgtcaaccttgattatccttctgtactaaggcttaatattaattactgtctgtacttgacattatataaacatgtttttcag

Basic information

species Glycine max
transcript GLYMA11G07720.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G07720.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 8
TTTGAATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGGgtacattatattt-----gtcaaccttgattatcct---tctgtactaaggcttaatat-taattactgtctgtacttgacattatataaacatgtttt--tcag
|||||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||||||    | |  |     || ||||    |||| ||    || |  |||    |  | | ||  |  |    ||| ||  ||| || ||| ||| |||   ||||
TTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGGgtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaatt--catgatgtaatcatctttaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098339|gb|HO760080.1|HO760080
EST:     AATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGG                         GCTAGGAGAGAAGATACTTTATTTAAGCTTGCCCACTTCAGGCGGCACAAG
genomic: AATGCAGGGAATTCAGAGAATCGATCCTGGGAGTTATGCCTCATCAATGGgtacattata ... tgtttttcagGCTAGGAGAGAAGATACTTTATTTAAGCTTGCCCACTTCAGGCGGCACAAG