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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGgttggccatctaatgtagcctgtgtgttctaatcttaagtttccgtgtgttttaaagtgtatggaagttatattttaatttccctttaatttatctatgt...

Basic information

species Glycine max
transcript GLYMA11G05940.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G05940.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g00600.t01 (Vitis vinifera), 5'ss of exon 8
GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGgttggccatctaatgtagcctgtgtgttctaatcttaagtttccgtgtgttttaaagtgtatggaagttatattttaatttccctttaatttatct-atgt----
||||| || || |||  ||||||||||||||| || ||||| |||||||||||||||     || || | ||   | |   |   |  | | | |||   | | ||  |   || | | || || | ||||  ||||   ||     | || ||||    
GATCATGGATCAAAAGGGCATCGTGGAATTGGGTTTATCACATTTGCAAGTGCAGgtca---atatattttaaattttccttggca--ccttatttttaatattttgaatgatgcaagtaatttttcttttcttttcttctttgacaacctcatgttcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207732484|gb|GD709049.1|GD709049
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
EST: gi|192298605|gb|FG989251.1|FG989251
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG