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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggatactgctctgtgacaaggatactataaattgtagtcaatgttttataattgttcaaacatgtgattgagaagtcttctgaagcatgtaaatgtttttttaag

Basic information

species Glycine max
transcript GLYMA11G03230.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03230.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 8
ATTAGAGGAGCTATTTGGGGATGAAGAGAATAATCATAAAGGTGTTACGTGTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggatactgctctgtgacaaggatactataaattgtagtcaatgttttataattgttcaaacatgtgattgagaagtcttctgaagcatgtaaatgtttttttaag
 |||||||| || ||||||||||| ||||||  ||  | ||||| | | ||||||||||||||||| |  || ||||||||||||||||| || ||  | ||||||   |   | | | | |    | |  |  | |||||| | |    ||| | |     || |  |||| | ||      ||| |                       
TTTAGAGGAACTTTTTGGGGATGAGGAGAATTCTCGCAGAGGTGATGCATGTTTGAATGTGATGGCCACCCGTATTGCTACAGTTTTTGCCTCATTGCGGgtatgtatttcaagatttctaatt--gttgattcacattgtattaagatatttctgaa---gcataagtgtgttcgaa----tttcag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20497874|gb|BQ272804.1|BQ272804
EST:     GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGA                         GAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
genomic: GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggat ... tttttttaagGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
EST: gi|254335297|gb|GR846794.1|GR846794
EST:     GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGA                         A
genomic: GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggat ... tttttttaag-
EST: gi|254335297|gb|GR846794.1|GR846794
EST:     GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGA                         A
genomic: GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggat ... tttttttaag-
EST: gi|209729055|gb|BW655059.1|BW655059
EST:     GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGA                         GAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA
genomic: GTTTGAATGTGATGGCAAAACGGATTGCTACAGTTTTTGCTTCTTTAAGAgtatgtggat ... tttttttaagGAATTTCCTTCTGTTCGCTTTCGTGCTGCCAAGTCCCTAGATGCAACCACA