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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAAAACACTGTTCATAGgtgagtcttgttgatcattataaccacatgcctatcttcaagttctgtttcaatcatcaactttactattaatgttcttaaacttattttcctcttgtccaattactggattttactcag

Basic information

species Glycine max
transcript GLYMA11G02520.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g03850.t01 (Vitis vinifera), 5'ss of exon 4
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAAAACACTGTTCATAGgtgagtcttgttgatcattataacca-catgcctatcttcaagttctgtt--tcaatcatc-------aactttac---tattaatgttctta-aacttattttcctcttgtccaattactggattttactcag
||||| ||||||||||| || ||||||| | ||||| || ||||||||  |||||||||| ||| ||||| ||||| ||||||||||||||||| ||| ||| ||||   |        ||        ||  |||| |    |    ||  | | ||| |       ||  | |    | ||| |  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAAGAGTATGGCCAGTTTGGTGAAATAGCTATTCATAGTTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATGGgtaagtcagatcaccttacattgttggtttggttatcctaggctatcattcattactcacccccaatgaatctcatctgttttagtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag

upper sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 7
TTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAAAACACTGTTCATAGgtgagtcttgttgatcattataacca-catgcctatcttcaagttctgtt--tcaatcatc-------aacttta-ctattaatgt--tctta-aacttattttcctcttgtccaattactggattttactcag
||||| |||||||||||||| ||||||| | ||||||||  |||||||  |||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||| |||    |        ||        ||  |||| |    |    ||  ||| ||| |       ||  | | || ||  |||  ||||| ||| | | | |   ||    || |  || ||  |  | ||
TTCAAGAGTATGGCCAGCTTGGTGAAATAGCTATTCGTAGCTATACTCAACAAATTCTGTCAGGGCTTGCATATTTGCATGCTAAAAACACTGTCCATAGgtaagttagatcatcttacattgttggtttggttatcctaggctatcattcatcactcacccccaatgaatctcatctgtttttgtcatcttagaacatctgtgctaattaggtaagttttgtatcctgtttag