1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACTCCTTTGATGTCTGCCATGCATGAGGATAATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAGgtaaacaaaatgagacaccataagttttgtccctaaacgagtgtccttgcctgctaatagttcaaaataataatttatcatgtatttgggtgtctcag
species | Glycine max |
transcript | GLYMA11G01820.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAG ATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGATEST: gi|15000483|gb|BI321297.1|BI321297
genomic: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAGgtaaacaaaa ... ggtgtctcagATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGAT
EST: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAG ATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGATEST: gi|7795161|gb|AW780558.1|AW780558
genomic: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAGgtaaacaaaa ... ggtgtctcagATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGAT
EST: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAG ATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGAT
genomic: ATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAGgtaaacaaaa ... ggtgtctcagATTCCTGATATTCCCTTGAAGGCAAGAAAATTTGTGGTGAAGGTGTGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCCTTTGATGTCTGCCATGCATGAGGATAATTCTCCTGACTTGAGAGAAGTAGCAAGAATCCTTAATGACATATTTGAGgtaaacaaaatgagacaccataagttttgtccctaaacgagtgtccttgcctgctaatagttcaaaataataatttatcatgtatttgggtgtctcag
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA