1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCTGCGCTTAAAAATGCCAAAGACTCTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgccattttttaacattctctacacaggcttccatatatgtttaattatttcctctgaaatag
species | Glycine max |
transcript | GLYMA10G44630.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAG AATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCTGAAEST: gi|193310172|gb|FK274068.1|FK274068
genomic: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgc ... tctgaaatagAATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCTGAA
EST: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAG AATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCTEST: gi|193450800|gb|FK413074.1|FK413074
genomic: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgc ... tctgaaatagAATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCT
EST: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAG AATGCAAAAGTTGEST: gi|207832377|gb|GD804433.1|GD804433
genomic: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgc ... tctgaaatagAATGCAAAAGTTG
EST: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAG AATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCTGAA
genomic: CTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgc ... tctgaaatagAATGCAAAAGTTGAGACCGAGACTGCAGTGAGACAGTTAAATGGAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGCTTAAAAATGCCAAAGACTCTAAGGAAGGAGTTGATAAGGAAATCACATCTCTACAGACTGAAATTGAGgttaatatgccattttttaacattctctacacaggcttccatatatgtttaattatttcctctgaaatag
- - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - AAGGAA