Sequence
atgc intronic sequence ATGC exonic sequenceGATAAGGCAGCACCTGTTGCTACTCCTGAAAAGTCACCTGAAGAAGACCTTAATCCATTTTTAATATTCCCTAATCCAGAGGAAAATTTCAAGgtatttactttccttattttaaatttaatttgcattttctttctattttgttcattttgtggacccaatgcttcactctgttagtatgtaaggagtgatt...
Basic information
species | Glycine max |
transcript | GLYMA10G41920.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 8
GATAAGGCAGCACCTGTTGCTACTCCTGAAAAGTCA---CCTGAAGAAGACCTTAATCCATTTTTAATATTCCCTAATCCAGAGGAAAATTTCAAGgtatttactttccttattttaaatttaatttgcattttctttc-tattttgttcattttgtggacccaatgcttcactctgttagtatgtaaggagtgatt--
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------TCAATTGCTGTGGATACTCATCCACCACCAACATCTGAAGAAGAGCTTAATCCATTTTTGATATTCCCCCAGCCAGAGGAGAATTTTAAGgtactctactacctggttttcagttt---ttgcatcagtactcatatttttgctgacatattgattttttaagcctcttcattataaaatactttctatttta
upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 8
GATAAGGCAGCACCTGTTG---CTACTCCTGAAAAGTCACCTGAAGAAGACCTTAATCCATTTTTAATATTCCCTAATCCAGAGGAAAATTTCAAGgtatttactttccttattttaaatttaatttgcattttctttctatt--ttgttca-----ttttgtggacccaatgcttcactctgttagtatgtaaggagtgatt
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GATAAAACTGTTGCTTTGGAGACTTCTCCAGCACAGCCAGCTGAAGAAGAACTTAATCCATTTTTAATATTCCCTCAACCTGAGGAAAACTTCAAGgtacccaactctctggtgt--gtttttatcttttttttttttttaacaacttttcaacggcctttgttggagttttgcat-gcaccttgagttttttagtttt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208315330|gb|GE116150.1|GE116150EST: AGGAAAATTTCAAG GTGCATACTGAAGTGCCTTTTAGTGATGGTAGTATTTTGAGATGTTGCAAT
genomic: AGGAAAATTTCAAGgtatttactt ... ttgatttcagGTGCATACTGAAGTGCCTTTTAGTGATGGTAGTATTTTGAGATGTTGCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATAAGGCAGCACCTGTTGCTACTCCTGAAAAGTCACCTGAAGAAGACCTTAATCCATTTTTAATATTCCCTAATCCAGAGGAAAATTTCAAGgtatttactttccttattttaaatttaatttgcattttctttctattttgttcattttgtggacccaatgcttcactctgttagtatgtaaggagtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA