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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCTGATGAGGCAGCTGTTCTACTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATACATTGgtatgaggcagcaaacttaagtttctcctattaaaaacgtgggaatagattaattacttttatataagtcaagtagaattttagattaagttatgttgag...

Basic information

species Glycine max
transcript GLYMA10G38920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 8
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTAGCTGATGAGGCAGCTGTTCTACTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATACATTGgtatgaggcagcaaacttaagtttctcctattaaaaac-gtgggaatagattaattactt-ttatataagtc----aagtagaattttagat-taagttatgttgag-----------------------------------------------------------------
 |||||||||||||  || ||  | || || ||||||||||||||||||||||| | ||||  ||||||||| || ||||| || ||| ||||||| |||||||||  ||       ||| |  |||  | |||   |  ||||  ||  | | |   || ||  ||    |    |||||||| |  |    |  ||| |  | |                                                                  
TTTAGCTGATGAGGGCGCCGTCTTGCTCCTCTACTCATTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCGAACTGATTTGGATACTTTGgtatgattca-------taaatgcctctcaataagttccatgggtctatttcattcttttgttccattgtccttaaaagtagaaatccattcctctgttttactaacccttaagatgaagtccttatagtttcatattaatgatctatgctttaatattttttgatggacag

upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 8
CTTAGCTGATGAGGCAGCTGTTCTACTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATACATTGgtatgaggcagcaaacttaagtttctcctattaaaaacgtgggaatagattaattacttttatataagtcaagtagaattttagat-taagttatgttgag
||| ||||||||| | ||  | ||||||||||||||| || |||| || || |||| ||| ||||||||||| || ||||| || ||| |||| ||||||||||||  || ||  || |  |||||    ||    |  |   ||    |       | ||  ||      |  |  |    |    ||||        | 
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaacatcag-ctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcacatcaccagcccaaccctaagacccaaaaaa