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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGgtaagtgttccattattattcaagtaagacttactattccaatcttacattatgttctttaaaatgcttgacttgtacctaggttgtctttttgtaggat...

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGgtaagtgttccattattattcaagtaagacttactattccaatcttacatt-atgttctttaaaatgcttgac-ttgtacctaggttgtctttttgtaggat----------------------
|| |||||||||||||| || ||||| || ||| |||| |||||||| || ||||||||||| || || |||||| |    | |  | |    |     | ||||    | | || | ||  || ||  | |||    || | || |  | | ||| |  | |  | |  |                      
TTCAATTACAGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCAgtaagtatctggtca--agtttgattgacttcactagctaagtttttccttcgtgatcactgaaaattgtggcgttctgtcaatgtttttgtataatggtctcgtctctggtacacattttcag

upper sequence: GLYMA10G38590.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 5'ss of exon 8
TTTAATTACAGCAGTGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGgtaagtgttccattattattcaagtaagacttactattccaatcttacattatgttctttaaaatgcttgacttgtacctaggttgtctttttgtaggat--------
||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| || || || |||||| | ||| ||  ||  || | ||    |||    |  | || ||    ||  ||  |||      ||  |||||   ||||   | | |||  |  ||        
TTTAATTACAGCAGTGGACAACCTGCACCTGAAACCATCACAGACAAGATTTATGGGAACACTCTTTCGgtatg-gttgca--atctttaatgtc---cttttgttctccatgttttccta-attgcttattgcttttatcttgtgtatagggcatttattt-cattatctcatttt