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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg...

Basic information

species Glycine max
transcript GLYMA10G37730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g47240.2 (Oryza sativa), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattggattgggatgccta---gtgaaattatg
|||||| ||||| ||||||||||| |||||||| | |||||| || ||| | ||||| ||||| ||||||||||||||||| ||     |    ||| |    | |  |  ||  ||    | |    || |   ||     ||  ||||  |||       |||    | | || || 
GGATATTAAAGGTGCAAATATACTAGTAGATCCTAGTGGTCGTGTTAAGCTTGCAGATTTTGGAATGGCAAAACATgtaagtttttc--tgcccactttaattttttgaaaatgacttttgtcaattgaactttattttccgtgt-cattccatttctgcatctatgcctcatatcata

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaac--attggattgggatgcctagtgaaattatg
||| || ||||| ||||| |||||||||||||| | |||||| || ||| | || ||||| || ||||||||||||||||  |    | |   || | |  |      | | | ||| |||||      ||| | | | || | ||   |  | |||   |    || |    || | 
GGACATTAAAGGTGCAAACATACTGGTAGATCCTAATGGTCGTGTAAAGCTTGCTGACTTCGGAATGGCAAAACATgtaaattctctgtttcaaattgtaaaaaaaaaaatctttct-catttgtcaggaataactaaaatttaaagcaaaagcattattagatgtaattcc-ttgta

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G175504_T01 (Zea mays), 5'ss of exon 6
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagaga---taataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg-
||| |||||||| || || ||||| ||| |||||| ||| || || ||| | ||||||||||| |||||||||||||||||  | ||||   |   | | || |    |   ||| |   | | |||   |       |    | |  | |||| | |  |    ||  |    |||   
GGACATCAAAGGTGCCAACATACTAGTAAATCCAAGTGGCCGTGTTAAGCTTGCAGACTTTGGAATGGCAAAACATgtaagtcttgagagtctcgaagccattctac-ttggttaaaa--gtagttaaaatgggccgatgttttctacatattgaaatatgg-atctgctatccttacat

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg--------------
 || |||||||| ||||| ||| ||||||| || | ||| || || ||| | || |||||||| ||||||||||||||||| ||            | | ||   |   ||||  ||   | |||   ||   | | | || | |||| | |  |   ||    |  ||    |||              
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttt------------tctgcatgttttcttattcctatttgtaga--aagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt

upper sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 5'ss of exon 6
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattgga-ttgggatgcctagtgaa-attatg--
|||||| ||||| ||||||||||| ||||| |||| |||||| |||||||| ||||| ||||| |||||||| |||||||| ||  ||  |   ||| |    | |     || ||  ||   |    ||   |   ||  |||    ||| | |||| |     | |||   |||    
GGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCATgtaagtttgtaggcatatactttt---tatttgaaatgtcctcaaacaaaacaagc-atcaagcaatgggttttgaagttggtaaatggaatgattgttaaatg