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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACCCAACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaataattccatgccttgaagtgtcctattaccttggcaggcgatattctcatatttgagttcttacaaaggacaggaaaatcacaatcaaatgc...

Basic information

species Glycine max
transcript GLYMA10G37210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 8
TTCACCCAACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaataattccatgccttgaagtgtcctattaccttggcaggcgatattctcatatttgagttcttacaaaggacaggaaaatcacaatcaaatgc---
|||| ||||| |||||| |||| || || || || ||||| || ||||||||||||||||||||||  || |||||||||||||||||||| ||||||||||| || ||| | |  | | |     |     || ||         | | ||| | |||  | |  |    |  |        |  |   | |||        
TTCATCCAACTCCAACCCGAGCAGAAGTTTCAGACATTGCTATAGCTGTTCGAGAAGGTTCTGATGGCATTATGCTTTCTGGGGAAACTGCACACGGAAAgtatgtgata-tccttttcttatgcatagatgatcactcacatgatcaaaatt-taataactaaagtag-gctgattttttttattttttattcagtcatact

upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 8
TTCACCCAACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaataattccatgccttgaagtgtcctattaccttggcaggcgatattctcatatttgagttcttacaaaggacaggaaaatcacaatcaaatgc------
|||| ||||| |||||| | || ||||| || || ||||| || |||||| |||||||| |||||||  |||||||||| || |||||||||||||||||||||||   | |   ||   || | ||   |||||   || ||     ||| |  |||   ||| |  |||  |    || |||  |||   | |  ||       
TTCATCCAACTCCAACCCGGGCAGAGGTCTCAGACATTGCTATCGCTGTTAGAGAAGGTGCTGATGCGGTAATGCTTTCAGGAGAAACTGCTCACGGAAAgtaagtggcagt---atcttttcatgtactctattgatttagc---ttataatggcat---tgaatgtttattatatgcatgaatctcaactttacttgatatcag

upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 8
TTCACCCAACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaataattccatgccttgaagtgtcctattaccttggcaggcgatattctca-tatttgagttcttacaaaggacaggaaaatcacaatcaaatgc
||||||||||||||||| |||| |||||||| || ||||| |||||||| ||||| ||| |||||||| | ||||||||||| ||||||||||| ||||||||||   |   ||   |  ||      ||||       | || || |||| |   |  |  |  |||| ||    | | |  |   |    |    | | 
TTCACCCAACACCAACCCGAGCAGAGGTATCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAgtaagctctttctcttggagtttctagttccttaagatgtagctggagataatgggagcaccttggttcatattgggaaaaaaatgtttggcacttgagg-

upper sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S205_25V6.1 (Physcomitrella patens), 5'ss of exon 7
TTCACCCAACACCAACCAGAGCCGAGGTATCCGATATTGCAATTGCTGTTCGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaataattccatgccttga-agtgtcctattaccttggcaggcgatattctcatatttgagttcttac-aaaggacaggaaaatcacaatcaaatgc----
 |||||| || || ||  |||| ||||| || || || || ||||| || || |||||| | || ||| | ||||||||||| ||||| ||||||||||||||||||    |   ||   |||| ||| | || | |  |   |      ||  ||||||    |||   | | |||     ||   ||||   | |    |    
CTCACCCCACTCCCACACGAGCAGAGGTTTCAGACATAGCTATTGCCGTCCGTGAAGGTGCGGACGCAGTTATGCTTTCTGGTGAAACCGCTCACGGAAAgtaagtacctttggaatttgttgatagtcttctttaatatcatc------taagctcatagcccagtaactgccaaaattttggggcatcaggcttatcgtcagtg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189139|gb|HO037542.1|HO037542
EST:     CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA                         GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: gi|298196130|gb|HO044521.1|HO044521
EST:     CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA                         GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: gi|151410647|gb|EV280462.1|EV280462
EST:     CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA                         GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
EST: gi|151411074|gb|EV280885.1|EV280885
EST:     CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAA                         GTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA
genomic: CGAGAAGGTTCTGATGCAATAATGCTTTCTGGGGAAACTGCTCACGGAAAgtaagtaata ... tataatgcagGTTCCCGCTAAAAGCCGTGAAAGTAATGCATACCGTAGCATTACGGACAGA