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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGgtgattcagtcagttattgtgtttctgtttttgtttgctagttaatctctttttgacatcttgttatgacattgctgctgactttgttgcatctttcacag

Basic information

species Glycine max
transcript GLYMA10G36770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36770.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0072g00310.t01 (Vitis vinifera), 5'ss of exon 8
CCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGgtgattcagt----cagttattgtgtttctgtttttgttt--------gctagtt---aatctctttttgacatcttgttatgacattgctgctgactttgttgcatct---ttcacag
||||||||| ||||||||||||||||||||||| || || |||||| |   |    || | | | ||    |  | | | ||        |  ||||   ||| |||  ||   | ||  |  ||||  ||||| ||| ||  ||   | |   || | ||
CCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAGgtgagttgttgcttcattcactctgcactttgtatagctttagatggggtcagttgtgaatatctccttttgacctaatcttgactatgctgttgaattaattctctttatgttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733034|gb|BM527388.1|BM527388
EST:     TGACCGTTCAAG                         GGACTTCACAAACCCAAATCTCCCCACAGAGCAGAAAGGCAGACCTTCACA
genomic: TGACCGTTCAAGgtgattcagt ... tctttcacagGGACTTCACAAACCCAAATCTCCCCACAGAGCAGAAAGGCAGACCTTCACA
EST: gi|11413709|gb|BF425720.1|BF425720
EST:     CCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAG                         GGACTTCACAAACCCAAATCTCCCCACAGAGCAGAAAGGCAGACCTTCACA
genomic: CCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGgtgattcagt ... tctttcacagGGACTTCACAAACCCAAATCTCCCCACAGAGCAGAAAGGCAGACCTTCACA