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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaattcacataataatttgcttgcttcatttatttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt...

Basic information

species Glycine max
transcript GLYMA10G36590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G71696.2 (Arabidopsis thaliana), 5'ss of exon 8
TTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaa------ttcacataataatttgcttgcttcattta-tttatttaattatttttgtgatgtctactctgggctgagctgtttatttccagt------------------------------------------------------
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TCCTTTCAATGACGACTTGAATTTGAGGCAACCTGAAACTAAGGCAATTATGACTTGGCTGAGAGATATACGATTCACAGCGTCGGCTACTCTGCACGGGgtaattttcctgtagcagacttgtgcatactataacgtcttaagtatgtccaatttgaaagtttactttcaagat-tatgggagggggttttcaatgtaatgtcaaggaaaatcttgattcaatgtgaaaaaaatatttgctaaaccagcttttgttttag

upper sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 8
TTTTATAAATGATGATGAGGATTCCCGGCAACCTGAAACAAGAGCGATAATGAATTGGTTGAGAGATATACGATTCACAGCATCTGCCACTTTGCATGGGgtattaattctttggaattcacataataatttgcttgcttcatttatttatttaattatttttgtgatgtctactctgggct--gagctgtttatttccagt-
|  | | |||||||||| ||||   || ||||||||||||| ||| || ||||  ||||||| ||| ||||  |||||||||||||||| ||||||||||||  || |||| |   |||||  |  | || | | |||||     |  ||||  |   ||     |     ||||||         ||| ||  | | |  | 
TCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCAATCATGAGGTGGTTGAAAGAGATACATTTCACAGCATCTGCCAGTTTGCATGGGgtgatacttctctattattcattt--ttatctccctgcttgccaaagctattacagc-ttgcgaaggctattactctacttctcatgctattactctaccttg