1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAATTATATCATGAATTGCATGCCTTAGATAGATTTGATCAAGATTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaatgaatattatttctgataattgaaactgtacaacatccctcccccataccttcgcatagcgaagagcctctgggcaatggggtacgaagtt...
species | Glycine max |
transcript | GLYMA10G36210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAG GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATGEST: gi|193360326|gb|FK327686.1|FK327686
genomic: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaat ... aaatgtgtagGAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATG
EST: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAG GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATGEST: gi|208233250|gb|GE031915.1|GE031915
genomic: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaat ... aaatgtgtagGAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATG
EST: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAG GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATGEST: gi|6666544|gb|AW278011.1|AW278011
genomic: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaat ... aaatgtgtagGAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATG
EST: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAG GAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATG
genomic: TTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaat ... aaatgtgtagGAGACAGCCTTGCAATTTTAAGAGCAGAATTGAAGAGTCAAAAGAAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTATATCATGAATTGCATGCCTTAGATAGATTTGATCAAGATTATCGGCGCAAGTTTCAAGAAGAGGACAATTCAAATGCCACACAAAGAGgtataaaaatgaatattatttctgataattgaaactgtacaacatccctcccccataccttcgcatagcgaagagcctctgggcaatggggtacgaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc