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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaattttctcttgagattccctggcaatattatcaaattttctgactattgaatacccaggatgcttatgatgccaaaataagctattatact...

Basic information

species Glycine max
transcript GLYMA10G35830.5
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35830.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g03670.t01 (Vitis vinifera), 5'ss of exon 10
TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaattttctcttga--gattccctggcaatattatcaaattttctgactattgaatacccaggatgcttatgatgccaaaataagctattatact-
|| ||||| ||||||||||||||||||||||| || || || |||| |||| |  | ||      ||   |  |||||       || | | ||    ||   |||   | |||       ||  | ||  || ||   || || | || 
TGCTATCCAGGTGAAGATGATTTGGCCATTGCACGAGCTGTCTTAATgtaagtacacttcaaaactggatgcctccctattttattttttagataagatgctcatttttttcccctt-cattttggttgttaacatt--ctgttttgctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208111486|gb|GD909204.1|GD909204
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193646645|gb|FK591326.1|FK591326
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193437204|gb|FK400425.1|FK400425
EST:     TCGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208094106|gb|GD891535.1|GD891535
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207762945|gb|GD733876.1|GD733876
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193499467|gb|FK461262.1|FK461262
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208308433|gb|GE109693.1|GE109693
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208160175|gb|GD957071.1|GD957071
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193527310|gb|FK487566.1|FK487566
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208274393|gb|GE070125.1|GE070125
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193379005|gb|FK344339.1|FK344339
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193533179|gb|FK493699.1|FK493699
EST:     CGGGCAGTTTTAAG                         GTACTTGTTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTG-TCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|193488795|gb|FK454966.1|FK454966
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAACGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208140735|gb|GD935189.1|GD935189
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208328426|gb|GE127540.1|GE127540
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTTGTAAAGATGCGAACATACTAATGGAAGAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAA-TTTG-AAAGATGCGAACATACTAATGGAAGAG
EST: gi|208058290|gb|GD856837.1|GD856837
EST:     CGGGCAGTTTTAAG                         GTACTTGTCCTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208174444|gb|GD971723.1|GD971723
EST:     CGGGCAG-TTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193378057|gb|FK344580.1|FK344580
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208195028|gb|GD992133.1|GD992133
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193638644|gb|FK586354.1|FK586354
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193433055|gb|FK395735.1|FK395735
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193440782|gb|FK405571.1|FK405571
EST:     GGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACCAATGGAAGAGAT
genomic: GGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208260520|gb|GE058100.1|GE058100
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193422211|gb|FK389670.1|FK389670
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208093311|gb|GD893554.1|GD893554
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|192300499|gb|FG988856.1|FG988856
EST:     TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAA                         GTACTTGTCTTCAG-TAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193720715|gb|FK657815.1|FK657815
EST:     CGGGCAG-TTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193592668|gb|FK546040.1|FK546040
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|151412195|gb|EV282007.1|EV282007
EST:     TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAA                         GTACTTGTCTTCAG-TAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193351506|gb|FK317964.1|FK317964
EST:     CGGGCAGTTTTAAG                         GTTACTTTGTTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TAC-TTG-TCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGA
EST: gi|208070391|gb|GD870928.1|GD870928
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208111804|gb|GD913302.1|GD913302
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207713495|gb|GD696178.1|GD696178
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208104039|gb|GD902224.1|GD902224
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208225269|gb|GE024946.1|GE024946
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193632721|gb|FK580569.1|FK580569
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208075437|gb|GD874282.1|GD874282
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193546231|gb|FK503192.1|FK503192
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193327641|gb|FK293004.1|FK293004
EST:     GGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: GGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|208114546|gb|GD912157.1|GD912157
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208105208|gb|GD905437.1|GD905437
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAGGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193556536|gb|FK515189.1|FK515189
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207749796|gb|GD718582.1|GD718582
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|193722090|gb|FK657076.1|FK657076
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208213216|gb|GE012359.1|GE012359
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208281448|gb|GE073736.1|GE073736
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208179562|gb|GD977905.1|GD977905
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATG
EST: gi|207753992|gb|GD723786.1|GD723786
EST:     CGGGCAGTTTTAAG                         GTACTTGTCCTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208166752|gb|GD960386.1|GD960386
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208337371|gb|GE133115.1|GE133115
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208307359|gb|GE108829.1|GE108829
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207755348|gb|GD729383.1|GD729383
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208220567|gb|GE017143.1|GE017143
EST:     CGGGCNGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208077330|gb|GD876079.1|GD876079
EST:     GGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: GGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193360362|gb|FK325132.1|FK325132
EST:     CGGGCAG-TTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|193331998|gb|FK301970.1|FK301970
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207837150|gb|GD808459.1|GD808459
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAA-TTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|193669876|gb|FK609844.1|FK609844
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208207455|gb|GE004996.1|GE004996
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAG-A
EST: gi|193344041|gb|FK311955.1|FK311955
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193570310|gb|FK524905.1|FK524905
EST:     CGGGCAGTTTTAAG                         GTTACTTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TAC-TTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAG
EST: gi|193490641|gb|FK457726.1|FK457726
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208183886|gb|GD985762.1|GD985762
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193435557|gb|FK400729.1|FK400729
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTTGAAAGATGCGAACATACTAATGGAAGAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAA-TTTGAAAGATGCGAACATACTAATGGAAGAG
EST: gi|193377816|gb|FK341480.1|FK341480
EST:     CGGGCAGTTTTAAG                         GTTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAGTGGAAGAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|207842322|gb|GD814608.1|GD814608
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208163815|gb|GD963287.1|GD963287
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208154866|gb|GD957613.1|GD957613
EST:     CGGGCAGTTTTAAG                         GTTTACTTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGA
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG--TAC-TTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGA
EST: gi|193728975|gb|FK663851.1|FK663851
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193499907|gb|FK464264.1|FK464264
EST:     CGGGCAG-TTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207701427|gb|GD684016.1|GD684016
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208054736|gb|GD850653.1|GD850653
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208071973|gb|GD871473.1|GD871473
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193725721|gb|FK660113.1|FK660113
EST:     CGGGCAGTTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
genomic: CGGGCAG-TTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: gi|207717530|gb|GD699116.1|GD699116
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208090885|gb|GD888300.1|GD888300
EST:     CGGGCAGTTTTAAG                         GTTACTTGTTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAG
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTG-TCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAG
EST: gi|208048508|gb|GD847481.1|GD847481
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207841238|gb|GD810675.1|GD810675
EST:     CGGGCAG-TTTAAG                         GTACTTGTCCTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193425004|gb|FK392127.1|FK392127
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGC
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGC
EST: gi|193426431|gb|FK386588.1|FK386588
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208094455|gb|GD894054.1|GD894054
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|207827937|gb|GD798752.1|GD798752
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|193363916|gb|FK331696.1|FK331696
EST:     TCGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: gi|208213160|gb|GE012345.1|GE012345
EST:     CGGGCAGTTTTAAG                         GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaattttctcttgagattccctggcaatattatcaaattttctgactattgaatacccaggatgcttatgatgccaaaataagctattatact

- - - - -  TGAAGA
- - - - - -  AAGATG