1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGgtatgaggaaataaacagttttcattctattttttccttgtatataatacttttccttttttattggctatgttgcttagtgcctttgcaaatgtaattg...
species | Glycine max |
transcript | GLYMA10G35300.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGG TATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATCEST: gi|254315475|gb|GR825284.1|GR825284
genomic: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGgtatgaggaa ... gttctttcagTATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATC
EST: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGG TATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATCEST: gi|27424347|gb|CA935867.1|CA935867
genomic: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGgtatgaggaa ... gttctttcagTATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATC
EST: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGG TATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATC
genomic: AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGgtatgaggaa ... gttctttcagTATGGCGTCAAAATTTTTGTTATTACGTCTTTTAAGGATACATGTTACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGGCGAATGGGGTGATCATGTCACATTGCAGGCTGCTGCAGATTGGgtatgaggaaataaacagttttcattctattttttccttgtatataatacttttccttttttattggctatgttgcttagtgcctttgcaaatgtaattg
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaataa