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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcttattgttcaccatatatgagcattaatttatgcctgactcttagagtcccatttcctcaatttttccataagatg...

Basic information

species Glycine max
transcript GLYMA10G35290.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g04640.t01 (Vitis vinifera), 5'ss of exon 6
GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctt-tcaagctttatgttatcttattgttcaccatatatgagcattaat-ttatgcctgactcttagagtcccat-ttcctcaatttttccataagatg-
|||||| || |||||||||||| ||| | ||||||   ||||||| || ||| |||| || || ||||| |||||||||||||||||||| ||||||||||| | || | ||||||||  ||  || |||   || |||  |||    ||  | || || ||  ||||     ||       |||| |||| || |  |     
GCATGGAACAGAAAGTCAAAGACAGGCACTAGCCAGTGAACTTACTGGCCATATTTTGCCCCTAAGTCTTCAAATGTATGGTTGCAGAGTTATTCAAAAGgttctttcttaagctttacatt--ctaatttcccagcattcatg--ttttggtgttctgtctctctctctctctcaggcgcccctccatttatctactaacctt

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S96_93V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcttattgttcaccatatatga-gcattaatttatgcctgactctta--gagtcccattt--cctcaatttttccataagatg
||| |||||  |    || || |  ||  | || | |||  |    || |||||| |    || |||||||| ||||| ||||||||||||||||| |||||     |   |  |    ||     || ||  |    || ||  |  ||     ||  ||||  |  |  |||  | |  |    |  |||  | | ||  |  
GCACGGTACTCAGCAGCAGAGGAGAGAGCTGGCAAGCCAGTTGGTGGGGCATGTTCTGGTGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatgacttgtggctggatttg---catggtcgagtggatttgttgttttggcgaatagctgagacggaaggagaacgagctggtgttcattcctgcgtagaa--

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S96_110V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca-agctttat-gttatcttattgttcaccatatatgagcattaatttatgcctgactcttagagtcccatttcctcaatttttccataagatg------------------------------------------------------------------
||| || ||  |    || || |  ||  | || | | |  |    || || ||| |    || |||||||| ||||| ||||||||||||||||| |||||     |    |||  ||  | |       ||| |     | |    || ||   | ||   |    |||   | | |  |     ||||      |   |                                                                  
GCACGGCACTCATCAGCAGAGGAGAGAGCTGGCAAGCAAGTTGGAGGGACAAGTTCTGGTGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatggcttgtggctgcattatcacggccgagttgatttgctgttgtgatgaagaga-gctgaaacggtaggagcacgtggcggtggttttcgttggatccggtcgggttgtagattttggataggataattgagcgcaacggggaggtggttgtggcgtgcgtgcag

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S35_161V6.1 (Physcomitrella patens), 5'ss of exon 2
GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca--agctttatgtt--atcttattgttcaccatatatgagcattaatttatgcctgactcttaga-gtcccatttcctcaatttttccataagatg----------------------------------------
||| || ||  |    || || | |||  | || | |||  |    |  || ||| |  | || |||||||| ||||| ||||||||||||||||| |||||   |  ||  |  || ||| |  |  |  ||  |     |      |     |   | |   |   |    | ||| || |    ||   |||  |     ||                                        
GCACGGCACTCAGCAGCAGAGGAGGGAGCTGGCGAGCCAGTTGGTGGAGCACGTTCTGACGCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtaagtcccactattttcatggtgaagttggtttgttgttgtgatgaggagcggaagaacggaaggagcaagtatgtcacagtcgagcagggtttggacgcagtgagtaaacgcagttgggacgtgggatgtggtgtgcgtgcag

upper sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S35_216V6.1 (Physcomitrella patens), 5'ss of exon 6
GCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttcaagctttatgttatcttattgttca---ccatatatgagcatta--atttatgcctgactcttagagtcccatttcctcaatttttccataagatg-----------------------------------------------------------
||| || ||  |    || || |  ||  | || |||||  |    || || ||| |   ||| |||||||| ||||| ||||||||||||||||| |||||    ||     | | ||   || ||| | | |      | | |    || |  | |     | |  |   ||       |       ||   | |  ||  ||                                                           
GCACGGGACTCAGCAGCAGAGGAGAGAGCTGGCAAACCAGTTGGTGGGGCACGTTCTGGTTCTGAGTCTGCAGATGTACGGTTGCAGAGTGATTCAGAAGgtatggttttc-ttgtgtgcattcctatggctaaagtttgtgtgttgtgatgaggagtccctacggtatacgagcacttggtggtggtgatgagtactaaaattgagcaggatctagatagggtaattggaaccaattgaaaactgttcgtgatgcgcgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590609|gb|DB973340.1|DB973340
EST:     ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAG                         GCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC
genomic: ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca ... ttattgacagGCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC
EST: gi|6914723|gb|AW396253.1|AW396253
EST:     ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAG                         GCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC
genomic: ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca ... ttattgacagGCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC
EST: gi|21889642|gb|BQ742855.1|BQ742855
EST:     ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAG                         GCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC
genomic: ATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGgtgcctttca ... ttattgacagGCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTC