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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtctttgacatgttttggttactattttctttgaatcatcattttattgcatattttgatggttcaaaatcagttttcctcctcacttaaaaaaaaaaagtcccttttcctcctaatcctcttctattttag

Basic information

species Glycine max
transcript GLYMA10G34000.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g06270.1 (Oryza sativa), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgt-ctttgacatgttttggttactattttctttgaatcatcattttattgcatattttgatgg-ttcaaaatcagttttcctcctcacttaaaaaaaaaaagtcccttttcctcctaatcctcttctattttag
| |  || |||||||||||||| ||||||||||| || | ||| |||||  || | ||||| |||||||| ||||| ||||| || ||||| || || |||||||| | |||  ||||||  | |  | ||||| | ||| ||    | |     |     | |||  |||| | | || | ||    |    ||  | |                                      
AGAATAACTTAGATGGGAAATCTAAGCAGTATAAGGATCCTGCATTGACCTATATATTTCTTATGAACAACATTCACTATATGGTTAGATCTGTCCGCAGgtatgttccttgttatgtttcaggtgttgttttcctggaagcaagcctgttcaatactccctcatgtcttcatacttagatgtcggtttagtatattaca--------------------------------------

upper sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g05880.1 (Oryza sativa), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtctttgacatgttttggttactattttctttgaatcatcattttattgcatattttgatggttcaaaatcagttttcctcctcacttaaaaaaaaaaagtcccttttcctcctaatcctcttctattttag
|||  || || ||||| ||||| || ||||| |  || | ||| |||||  |  | ||||| ||||| || ||||||||||| |||||||| ||||| |||||||| |    | | | || |   ||   | || | |||  |     ||| ||  ||||  ||| |      || || ||  ||||||                                               
AAAATAACTTGGATGGAAAATCTAAACAGTACAGGGATCCTGCATTGACCTACTTATTTCTGATGAATAACATTCATTATATGGTCAGATCTGTTCGTAGgtatgtttgcctcctctctttgaatctgcatcctataaatactggcaatat-gctcattt-aatgttgt----tctgtgtt--tcctcag----------------------------------------------

upper sequence: GLYMA10G34000.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 5'ss of exon 8
AAACCAATTTAGATGGGAAATCAAAGCAGTATAAAGACCTTGCGTTGACACATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtctttgacatgttttggttactattttc--tttgaatcatcat---tttattgcatattttgatggttcaaaatcagttttcctcctcacttaaaaaaaaaaagtcccttttcctcctaatcctcttctattttag
|||||||||| ||||||||||| |||||||||||||| | ||| ||||| ||  | ||||| |||||||||||||| || || ||| |||| || || |||| ||| | |    |  | |  || | |  |||  ||||||   | ||   ||| |     ||   |||   | | | |   |||      |   ||  |                                         
AAACCAATTTGGATGGGAAATCTAAGCAGTATAAAGATCCTGCTTTGACTCACTTATTTCTTATGAACAATATTCACTACATGGTCCGATCTGTGCGTAGgtttgtttctagacttctgtacttccaaacttccttttgaaatgttataagtttgtcttccatgcagatcactgatagtgcttttgatgtgttgttttcag----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397587|gb|EV267460.1|EV267460
EST:     CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAG                         GTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAG
genomic: CATCTTTTTCTCATGAACAATATTCATTATATTGTCAGATCGGTTCGGAGgtatgtcttt ... tctattttagGTCTGAAGCCAAGGATTTACTGGGGGATGATTGGGTACAACGACATAGGAG