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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCTgtaagttcttagccataatctgttctgaactttgtttacatggagatttagaatcattagtgacatattcttgtagtttgatttatggaataatgtaaac...

Basic information

species Glycine max
transcript GLYMA10G33820.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G61580.1 (Arabidopsis thaliana), 5'ss of exon 7
GAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCTgtaagttcttagccataatctgt--tctgaactttgtttacatggagatttagaatcattagtgacatattctt-gtagtttgatttatggaataatgtaaac
|||||| | | |||||||||||||||||| ||  |||| ||||| |||||||||||||||||||||||||||| | |  |   ||||| |      | |  | |  ||   |    || | || |   |  | |||| |||||  |   ||| | ||               
GAAGTTGAGAGGCGTGGTCTTCAAGTGGCGGTTTCTGGCATTCCTAAGACAATTGATAATGATATTGCTgtaaatacccattgataattttcaacttaaggtctacttttctctc-atgtggagtttcttat-acatcttcttcatccattgttctag--------------

upper sequence: GLYMA10G33820.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0013g01140.t01 (Vitis vinifera), 5'ss of exon 8
GAAGTTAAAAAGCGTGGTCTTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCTgtaagttct--tagccataatctgttctgaactttgtttacatggagatttagaatcattagtgacatattcttgtagtttg-atttatggaa-taatgtaaac-
|||||  | || ||||||||||||||||| || || || || || |||||||| || ||||| |||||||||||||||  ||  |||| | | || |    |||  ||| |   |||  |   || |||  |    |   ||| ||   || ||| |||    | |   |||| 
GAAGTAGAGAAACGTGGTCTTCAAGTGGCAGTTGCAGGAATCCCTAAGACAATCGACAATGACATTGCTgtaagttctgttattcatactttttttt----ttttcttaaacc-agaagtgagattattcatactttgaacttttatgatgtattcatgctgcttactgaaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6567074|gb|AW234701.1|AW234701
EST:     TTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCT                         GTGATAGACAAATCTTTTGGATTTGATACTGCTGTGGAAGAAGCCCAGAGA
genomic: TTCAAGTGGCTGTGGCTGGGATTCCAAAGACAATTGATAATGATATTGCTgtaagttctt ... ttggctccagGTGATAGACAAATCTTTTGGATTTGATACTGCTGTGGAAGAAGCCCAGAGA
EST: gi|208306520|gb|GE104459.1|GE104459
EST:     TTCCAAAGACAATTGATAATGATATTGCT                         GTGATAGACAAATCTTTTGGATTTGATACTGCTGTGGAAGAAGCCCAGAGA
genomic: TTCCAAAGACAATTGATAATGATATTGCTgtaagttctt ... ttggctccagGTGATAGACAAATCTTTTGGATTTGATACTGCTGTGGAAGAAGCCCAGAGA