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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGACACAGATCATGACTTTTTCATTGATAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCTCAGgtctgttggtgttttaaatctttgccaatgtgcatgtgcctagttcagctctgctctactgtgtatggctatagcaagcctcatatgaaaattgttagtg...

Basic information

species Glycine max
transcript GLYMA10G32500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 8
GCTCGACACAGATCATGACTTTTTCATTGATAGAGAGAACCTTATTAAATATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCTCAGgtctgttggtgttttaaatctttgccaatgtgcatgtgcctagttcagctctgctctactgtgtatggctatagcaagcctcatatgaaaattgttagtg
| | |||||||||||||| ||||| ||||||| |||||||||||| | |||||| || |||||  | ||||| || || ||||||||||| || || |||||  ||   |||| ||         ||      |  ||| |   | || |  ||   | |||   |  |||||     | |                   
GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgttagt--atgttctattctgcatacagaactgagatgc-tgccttagttg-gcctaaatgttgtttcctatatgttacttag-----------------