1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttacatattaacaacataactggttggtctattatttccag
species | Glycine max |
transcript | GLYMA10G32480.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCGCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATEST: gi|192294765|gb|FG986614.1|FG986614
genomic: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAAT
EST: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAEST: gi|6726786|gb|AW311140.1|AW311140
genomic: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAA
EST: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAAEST: gi|298165881|gb|HO008852.1|HO008852
genomic: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAA
EST: TATGTAATGTGGATCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCGCACCCATGGTEST: gi|13311690|gb|BG405341.1|BG405341
genomic: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCTCACCCATGGT
EST: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAG GCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAA
genomic: TATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggt ... ttatttccagGCTCACCCATGGTTTAAAGGTATTGAATGGGACAAATTGTACCAAATGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGAAGTTAAACTTTCGGCAGAAGCAAAGGATCTTATTAGTAGACTCCTATGTAATGTGGACCAGAGGCTTGGAACCAAAGGGGCTGATGAAATAAAGgtgttgtggtgtgttcttttctgaattctataatttactttgggttacagttacatattaacaacataactggttggtctattatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT