Sequence
atgc intronic sequence ATGC exonic sequenceTATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCGgtttgtccagcatcttataataaacacaactttgactgcaaaatttaatcaataattatagctttaggttatgatccaggcctacttcatttatgttggt...
Basic information
species | Glycine max |
transcript | GLYMA10G31960.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G31960.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G464000_T02 (Zea mays), 5'ss of exon 7
TATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCGgt-----ttgtccagcatcttat-------aataaacacaactttgactgcaaaa--tttaatcaata-attatagctttaggttatgatccaggcctacttcatttatgttggt-------------------------
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CATTGATCTTGAACCACGCCTTAGTCACACATCAGCTGTGGAGCCTACACTTGCTCCAGTTGCGGTTGAGCGCACAATGACGACAAGAGCTGCAGCTTCCgtaattttctttcaatctttgtttttcctcaatgacttcactcctgattgataaatgtttatttatttcacagcagatttca--taaaagcaatgtttcctctattcaaaactaagaattttccaatatggttgatgcag
upper sequence: GLYMA10G31960.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 7
TATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCGgt-ttgtccagcatcttataataaacacaactttgactgcaaaatttaatcaataattatagctttaggttatgatccaggcctacttcatttatgttggt---
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CATTGATCTTGAACCTTGTCTAACACATACATCAACTGTGGAGCCTACTCTTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatcatatattttatcaaaatcatcttt---tgctatgtgtacttgcgaattttctttctcctttgtc-tccaacattctttgtcctgggtttgtatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254344049|gb|GR850959.1|GR850959EST: -TGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCG AATGCATTGCGGCAACAAAGATTTGTTCGAGAAGTCACAATACAGTACAAT
genomic: TTGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCGgtttgtccag ... ttatttttagAATGCATTGCGGCAACAAAGATTTGTTCGAGAAGTCACAATACAGTACAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTGATCTTGAACCTTGCCTTACACATACATCAACTATTGAACCCACCCTTGCTCCAGTGACTGTTGAGCGGACAATGACTACCAGGGCTGCAGCTTCGgtttgtccagcatcttataataaacacaactttgactgcaaaatttaatcaataattatagctttaggttatgatccaggcctacttcatttatgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT