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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctattgtaagatatcggtgaatgaattcaataatttgagtgacacaaatctaaagcatcctcctcctttttgtag

Basic information

species Glycine max
transcript GLYMA10G31310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os04g56480.1 (Oryza sativa), 5'ss of exon 7
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctattgtaagatatcggtgaatgaattcaataatttgagtgacacaaatctaaagcatcctcctcctttttgtag
 || || || ||  |  | || || |||||||| |||||||| || ||||| ||||| |||||||||||||||   |||||    ||   | |  ||   | |         |||  |||  ||  |   |  |  | || |    |  |   |  ||||||||
CATAACAGTAACCAGAGCACGTATTGAAACATCTATTCCTCGGAAGCATGGCCCTGCGATTGCTGGTTATGAGTCGgtatggaaactggttctgatattgtgt---------aatctaattgttctatctattcccaactgactt-tgttttgctcttttgtag

upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 8
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctattgtaagatatcggtgaatgaattcaata-atttgagtgacacaaatctaaagcatcctcctcctttttgtag
 || || |  || ||  | || || ||||||||||||||| | || ||||| |||||||||||||| || ||||  |||| ||| ||   | |  |||   |       |  || |   |   |||   |   ||  || |   |||   |      || |||||
CATAACAGCAACCCGGGCACGTATTGAAACATCAATTCCTAGGAAGCATGGCCCTGCAATTGCTGGCTACGAGACGgtattatcactggttctgttaattaactacatgacaaaattgttgtgtttacttcctactgattt---gcactttttgttgttctgtag

upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G27650.1 (Arabidopsis thaliana), 5'ss of exon 9
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctctctctattgtaagatatcggtgaatgaa-ttcaataatttgagtgacaca--aatctaaagcatcctcctcctttttgtag
| ||||   ||  ||| | || ||||||||||| |||||| | || ||||| ||||||||||||||||| |||   ||||| ||  || || ||     ||||  |||    || |||  | |  |   |  |     ||| ||   |||  |   | | | |||||
TGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAGCATGGACCTGCAATTGCTGGTTACGAGTCTgtatgttccttcactgtttcgtcatatatgtgcccaaaattcgtttacatatttatcctttcaatttatgtcattttttgcttctctgtag

upper sequence: GLYMA10G31310.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g00140.t01 (Vitis vinifera), 5'ss of exon 8
TATGACTGTTACTCGTTCGCGGATAGAAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctct---ctctattgtaagatatcggtgaatgaat-tcaataatt-tgagtgacacaaatctaaagcatcctcctcctttttgtag-------
  | ||  ||||||| || ||||||||| | |||||||||||||||||||||||||| |||||||||||||||  |||||| |   |   ||      | |  |||   | || | |  | | |  || | ||         |  ||| | | |    |  |  | ||        
CCTTACAATTACTCGCTCCCGGATAGAAGCTTCAATTCCTCGCAAACATGGGCCTGCTATTGCTGGTTATGAGGCAgtatgttgcttgatcttgtccatcaactatttctaaaagtaccttagtggttgttagcatgtttgttagaaaacttacaatccaatgatataattcattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193650755|gb|FK595878.1|FK595878
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GC-TTGGATAAGTTC-TTCAGAATG-TTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|9898819|gb|BE607787.1|BE607787
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208083199|gb|GD879229.1|GD879229
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|193472093|gb|FK437096.1|FK437096
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATG-TTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208087721|gb|GD888581.1|GD888581
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|23731912|gb|BU764103.1|BU764103
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
EST: gi|208119461|gb|GD917394.1|GD917394
EST:     AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAA                         GCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG
genomic: AAACATCAATTCCTCGCAAACATGGGCCTGCAATTGCTGGTTATGAGAAAgtatgatctc ... ctttttgtagGCTTTGGATAAGTTCTTTCAGAATGTTTTGCAG