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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag

Basic information

species Glycine max
transcript GLYMA10G30930.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
| |||| |||||||| ||||| || || || |||||||| |||||||||||||| || ||| |  | ||||| ||||| ||||||||||| || || |||||| || ||   || |   ||| |       ||||||    |  |   || | | |         ||||||      ||                                                                                                      
GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgttagtatgttctattc--tgcatacagaactgagatgctgccttagttggcctaaatgttgtttcctatatgttacttag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggattacttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
||||||| |||| |||||||| || || || || || ||||| |||| |||||| |||||| || | |||||| |||| ||||||||||| ||  | |||||| ||      ||||   |  ||  |  |   |   ||| |  ||| | ||   |        |  | |  || | |  |  |      |    |  ||| |                                                                              
GCTGGATGCAGACCACGATTTTTTGATTGATAAGGAAAATCTCATCAAATATGGGAACCATTCGTTGACCTATAGAATAGTTGATAGAATTTTCGCACAGgttagt-----ctactcaat--tttagcatcaaaaccttagccctttattaccaaaatgttgtgctttgtgtccttatattggcccttttact--gcttttag------------------------------------------------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G28900.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggattacttgttgcttctgtctttgagatttaactgtttc-tgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
||||||||| |||||||||||| | || |||||||| ||||||||  ||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  || |    |||   |   |   | || |   |||  |   |   ||  |       | |   |||| ||   |  |  |   | | ||    | |   | ||||  ||| || | |                                                     
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGCGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaaccttgctctttaatgcctactacttgaagattttatttatattgcttctattttaagagttctttcctcgtt--caaagttattattgctcttaagatgcattggtttcttctcag----------------------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggatta-cttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
||||||||| |||||||||||| | || |||||||| |||||||| |||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  | |||  | |||  |  |||  | ||  | || |||  | || ||        |||    |    || ||  ||     |  ||   |    |||  |   || ||||  ||| ||                                                     
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaatctttctacttgaggatttt-gtttatattgcttcc-atttaagagttctgtcctcgttcaaagttattattactcttaagaggactgtcatcatggataatgcattggtttctacttag------------------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G54450.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttg-tgtggattacttgttgcttctgtctttgagatttaactgtttctgactt-cagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
| ||||||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||||| |||||| | ||||| ||| |||| ||||| |||||| | |       |  ||    |  | | ||| | |   |||| |||   |||  | ||   |   | |   | |    |||   |||                                                                                              
GTTGGATACAGATCATGATTTCTTAATCGACAAAGAGAATCTCATCCGATATAGTAACCATGCGCTCACCTATAGGATTGTCGATCGAATCTTTTCACAGgttagctactccacatctgcatttcttatttttaaaa---aacttttttctactagctgccgaatgtctttgtcactcggtctacttaatag-------------------------------------------------------------------------------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S7_163V6.2 (Physcomitrella patens), 5'ss of exon 8
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtttgtgtggat-----tacttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag
||||||| ||||||||||||| ||||||||||||||  ||||  |  ||||||| || ||||| || ||||| ||||| || ||  | || ||||| |||||   | |  ||     |  |||| |   |   | ||   |         || |  ||     |  | |    | |    |  | | ||||    | |||                                                                                      
GCTGGATTCAGATCACGATTTTTTAATAGACAAAGATGATCTCCTTCGATATGGAAATCATGCTCTCACCTACCGAATCGTAGAGCGTATCTTTTCCCAGgtgcattttaatgttgatctttgtcgaagccaaccttattagcgcttgacttgttcctctgtgattaaatatgaaagggttactatatctagtttaggaa--------------------------------------------------------------------------------------