Sequence
atgc intronic sequence ATGC exonic sequenceTGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
Basic information
species | Glycine max |
transcript | GLYMA10G30070.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g06410.1 (Oryza sativa), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtata-tagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
||||||| |||||| | || |||||||||||||||||||| || ||||||||||||||||||||||| || | || || | || |||||||| |||||||||| | ||| | | || || | | | | ||| | |||| ||| | | | | | || | ||| || |||| | |
TGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGgtataacaattttctactgttgtttgcttgtgaagatcttttggtgtttatgataaagtatcatggtgtagataaacatagaaaacatt--ctatctggaag--------------------------------------------------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g29540.1 (Oryza sativa), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
|| |||| ||||| |||| ||||||||||||||||| || ||||||||||| || || || ||||| | |||| || | ||||| || || || ||||||| ||| | |||||| | || | | | | || || || | || | | | | | | | || || | | | || | |
TGAGGATTATGCGCCGGCTTCGTCATCCAAATATTGTACTCTTTATGGGTGCAGTAACACGGCCTCCACACTTGTCCATTGTATCAGAATACCTTCCTAGgtatagcaagtttg---tgttttca--aataaagtaggtcataacatgtgtagtcagtccaat--atgacaccagc---tatagccgtacagaactacagaagtagtaat-----------------------------------------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044180_T01 (Zea mays), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
| || || |||||| |||| || ||||||||||||||||| ||||||||||||||||| || ||||| || | || || | || || ||| | |||||||||| || | || | || || | | ||| || ||| || ||| || || ||| |||| | | | | | |
TTCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAGgtata--atagttacttttactacacaatcac-tgtttatatggaatg-tgtgaa-------ttaaatatcccactctagacaacacagaaggtatagactcgtgcccgcg----------------------------------------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G038982_T01 (Zea mays), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttca-ttattatatttttttacaaaata-atgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
| || || |||||| |||| || ||||||||||||||||| ||||||||||||||||| || ||||| || | || || | || || || || |||||||||| ||| || | || || || | || | || ||| ||| | | ||| || | | ||| ||||| | ||
TCCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATACCTTCCAAGgtataatacttactcttactacacaattgttgt-ttatattgtggaatgtgtgaattaaatatcccagtc-tagacaacacagaaactgtagctggcatgca---------------------------------------------------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G175563_T01 (Zea mays), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
| || || |||||| |||| || ||||||||||||||||| ||||||||||||||||| || ||||| || | || || | || || ||||| |||||||||| ||| || || | | | || | || ||| || ||| | | | || | | | | || || | ||| ||
TTCGAATTATGCGTCGGCTGCGCCATCCAAATATTGTTCTCTTTATGGGTGCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATCTTCCAAGgtataatatactttaactacaca-atcactgt-ttatattgtggaatg-tgtgaattaaatatc--ccactctagacaatacagaaggtactgccatgcataa-ac---------------------------------------------------
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 7
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
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TGCGAATAATGCGTAGATTACGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGCCCTCCAAACCTCTCTATCATCACTGAGTTTCTTCCAAGgtacat------------ttatatgatattttccccctccttttaatgaagtgaatttctttgccaaagtattggaatacttaatccgaatcttttt-------gttcttggcatgcat--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136021|gb|BU926531.1|BU926531EST: GCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAG AGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATTGATGAGAA
genomic: GCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagct ... cattttgcagAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATTGATGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCGGATAATGCGTAGGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTGTCAATCATTTCAGAGTATCTACCAAGgtatatagctttttcccttttttcattattatatttttttacaaaataatgagaaattcttgttggtcatattggtctttgcaaccttagctattttccatgttactcttttcatatttatgagtctcaccagtgttactaatgtaccattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT