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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGgtatgcaatgttatccagttccttctttcattgctaagacttttctacttaacctggtgctacagcatttcttgccaactaagcataagaaattcaagttttcttcaaaaagtgatttattatcaattcattataatttttggatcttcattttctcacatgattttgacaaacctatttttatcag

Basic information

species Glycine max
transcript GLYMA10G29360.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0525g00010.t01 (Vitis vinifera), 5'ss of exon 1
-------------------TTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGgtatgcaatgttatccagttccttctttcat--tgctaagacttttctactt-aacctggtgctacagcatttcttgccaactaagcataagaaattcaagttttcttcaaaaagtgatttattatcaattcattataatttttggatcttcattttctcacatgattttgacaaacctatttttatcag
                   ||||||||||  ||||||||||||||| | |||||||| || ||||| ||||| ||||| |||||||||||| ||   | | ||| |  |  || |   | |||  |       | || ||| |  ||||      ||||||| |  | | |  |||  |||   ||| |                                                                                      
TCCATGTTATCTGTGGCAGTTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgccat-ccaactagtcctattatttaagatactagcaaagaataattttaacgtcatgct-tgctttttcttggctgcca-gtttaattaata-gagtat--------------------------------------------------------------------------------------

upper sequence: GLYMA10G29360.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0441g00010.t01 (Vitis vinifera), 5'ss of exon 7
TTTGGAATCAGATCTGCTGTTTTAAATCCCGAGTTGCCTCAGAATTCTCGTCTCCATATTCTTGAGgtatgcaatgtta----tccagttccttctttcatt-gctaagacttttctacttaacctggtgctacagcatttcttgccaactaagc--ataagaaattcaagttttcttcaaaaagtgatttattatcaattcatta--taatttttggatcttcat-tttctcacatgattttgacaaacctatttttatcag
||||||||||  ||||||||||||||| | |||||||| || ||||| ||||| ||||| ||||||||||||  |   |    |||| ||  ||     | | || |||| |  | |   |  | || |         ||    |||   | | |  |||    ||   | || |  | ||   || | | |||| | | ||| ||   || ||  |||  | | | ||| | |  || ||       ||   ||||||||||
TTTGGAATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAAAATTCCCGTCTGCATATCCTTGAGgtatgccgtccaactagtccaattatttaagatactagcaaagaataattttaatgtcatgcttgctttttcttggccgccggtttaactaatagagtatgttaattgtagt-aatgggttaataattacctaatcactaaacaaattcgggaattccttattttttatgtggtt-------actgctttttatcag