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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGgtgacattgcattactaaagtatttgttgtacattgtgtttaccatttgtttaaaggctttgggttctacag

Basic information

species Glycine max
transcript GLYMA10G28200.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G26680.1 (Arabidopsis thaliana), 5'ss of exon 8
GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGgtgacattgcattac-taaagtattt--gttgtacattgtgtttacca-tttgtttaaaggctttgggttctacag---------------------------------------------
|| ||||| ||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||||     ||   |    | |||      | | || ||    | ||  |  | || |    | ||  | |   | |                                              
GTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAGgtacttatgttatgtgcagagtcccgagggtctaaatctcttctattaactcgtctttttgtttatgatatgaaatggctaaaagtttgaaaagaagactgatgttgcttcttacatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205514|gb|BU964767.1|BU964767
EST:     ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG                         GCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGTAAAGCTGGAAAG
genomic: ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGgtgacattgc ... ggttctacagGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGTAAAGCTGGAAAG
EST: gi|193554795|gb|FK513112.1|FK513112
EST:     ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG                         GCACCCTCAGAAGCAGAGGCTCAGTGT
genomic: ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGgtgacattgc ... ggttctacagGCACCCTCAGAAGCAGAGGCTCAGTGT
EST: gi|208336063|gb|GE134204.1|GE134204
EST:     ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG                         GCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCT
genomic: ATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAGgtgacattgc ... ggttctacagGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCT