1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATATACAGCTCATCACTATTCCCCAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatttatatgatacatgaacagttaacgtagatgcagttggttgagctgttatggtgtccaatatggtgaacatgaactagtttttctgggaaa...
species | Glycine max |
transcript | GLYMA10G27890.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|5126795|gb|AI748531.1|AI748531
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACT-GTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|6094914|gb|AW119581.1|AW119581
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACT-GTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|14205990|gb|BG839668.1|BG839668
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: GAATTACATTGGAGGAGCAACTAATACTGGGNATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|51342543|gb|CO983523.1|CO983523
genomic: GAATTACATTGGAGGAGCAACTAATACT-GGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|8284127|gb|BE021686.1|BE021686
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTNGAATTACATTGGAGGAGCAACTAATACTGGAATTNTATCAAAG ACGGACAGTGAACTTEST: gi|58023180|gb|CX709921.1|CX709921
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTT
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|192298183|gb|FG991688.1|FG991688
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTTGAATTACATTGGAGGAACAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|15202240|gb|BI425297.1|BI425297
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: CTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|151394363|gb|EV264234.1|EV264234
genomic: CTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: ATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|19054076|gb|BM732743.1|BM732743
genomic: ATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: CTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTTEST: gi|6483224|gb|AW202400.1|AW202400
genomic: CTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
EST: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAG ACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
genomic: TACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatt ... ttaatggcagACGGACAGTGAACTTGTGGAAACAGTTGATCGAGATTTGAGGAAAATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATACAGCTCATCACTATTCCCCAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGAGCAACTAATACTGGAATTTTATCGAAGgtgtgatatttatatgatacatgaacagttaacgtagatgcagttggttgagctgttatggtgtccaatatggtgaacatgaactagtttttctgggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA