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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACATGAGGACATGATTCATGACGATAGAGGTCAAGCTGATGGAGAATCTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggccacattgacatgtgtccatcaaaacattaaattctatatctttgtgacaaatcattattactccatcatacatatttaatatgtttgtttc...

Basic information

species Glycine max
transcript GLYMA10G24350.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016033|gb|CX702775.1|CX702775
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|193339872|gb|FK306563.1|FK306563
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTCTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|151403344|gb|EV273154.1|EV273154
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|213605917|gb|DB983622.1|DB983622
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|192309061|gb|FG999036.1|FG999036
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|26268201|gb|CA819264.1|CA819264
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|10252487|gb|BE820253.1|BE820253
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|58023144|gb|CX709885.1|CX709885
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|15203108|gb|BI425876.1|BI425876
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|193344201|gb|FK313613.1|FK313613
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTCTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|6951211|gb|AW423340.1|AW423340
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|192320514|gb|FK011924.1|FK011924
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|214008290|gb|DB989832.1|DB989832
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|16344759|gb|BI970354.1|BI970354
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACTTCTTTAATG
EST: gi|7796506|gb|AW781903.1|AW781903
EST:     CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAG                         GATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACT
genomic: CTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggcc ... tttcttgcagGATTAGAGCGAAGGTTTTCAAATAGTCCTAGCACTGTGGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACATGAGGACATGATTCATGACGATAGAGGTCAAGCTGATGGAGAATCTAATGATACACAAGAGCAGAGAAATACTGATTCTGCTTCAATGGAACAGgtatatggccacattgacatgtgtccatcaaaacattaaattctatatctttgtgacaaatcattattactccatcatacatatttaatatgtttgtttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG