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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTTCATATATTGGGAGCCTTATATCTGTTGATAACTTCAATGCTGTTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttcttgaagatgtttaaacttaggagaacatgcctagggaattgactattgttgatatcaatcatactcgtatttttagtcctttcacatttactaattaacccatcctcttacaaactatgattttatag

Basic information

species Glycine max
transcript GLYMA10G24060.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193462253|gb|FK426024.1|FK426024
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|254319331|gb|GR828951.1|GR828951
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|193474924|gb|FK442475.1|FK442475
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACAACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCT
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGAC-ACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCT
EST: gi|51343806|gb|CO984539.1|CO984539
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|6747218|gb|AW317674.1|AW317674
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|163921436|gb|EH039273.1|EH039273
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|61241653|gb|DN591042.1|DN591042
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|51343808|gb|CO984541.1|CO984541
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
EST: gi|254319332|gb|GR828952.1|GR828952
EST:     TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAG                         GACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG
genomic: TTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttct ... gattttatagGACGAGACACAAATCAAACCAGCTGAACAAGGTGAAGGTCCTGGAAACCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAATCTTCATATATTGGGAGCCTTATATCTGTTGATAACTTCAATGCTGTTGAAGTTCCTTCAAGTCACCCTCTCACTCTTGATGAGATGATGTTAGAGgtatgtttcttgaagatgtttaaacttaggagaacatgcctagggaattgactattgttgatatcaatcatactcgtatttttagtcctttcacatttactaattaacccatcctcttacaaactatgattttatag

- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG