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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCAGAGGTTTTACCACCAGATACAGACTGTCACCATTTCGTGCTTGAGgtagttggaagtttgctcaacttatattccttaatagtctttgtgccttagaacaaataattaactttatttatgcatttcatctgcacctctctag

Basic information

species Glycine max
transcript GLYMA10G10990.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCAGAGGTTTTACCACCAGATACAGACTGTCACCATTTCGTGCTTGAGgtagttggaagtttgct--caacttatattccttaatagtctttgtgccttagaacaaataattaactttatttatgcatttcatctgcacctctctag
|||||| || || || |||||||| |||||||||||||||||||| ||||||||||||||| | || ||||||||||| || || ||||| ||||| |||||  |||  ||||| ||   ||  | |||||  |       ||| |   |   |   ||||   |  ||  |||      | |||| | |         
GAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGgt--ttgatagtttcctactaagatctattcacttgccaggtttatagtt---attgaatagcgactttcgttt---tgctgcatccgtag--------

upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 8
GAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAAGCAGAGGTTTTACCACCAGATACAGACTGTCACCATTTCGTGCTTGAGgtagttggaagtttgctcaacttatattccttaatagtctttgtgccttagaacaa--ataattaactttatttatgcatttcatctgcacctctctag-------
 || || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||| |||||||| || |||||||| || ||||||||| ||||   | | |  | |||   |||||||| | |  |   |   |    ||   || | |  | | || | | || || ||   |    ||  |        
AAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAAAGCTGAGGTTTTGCCACCTGATACAGATTGCCACCATTTTGTTCTTGAGgtatttgggtttctacatacctttatttccttaaaaattatgaggatattagtcaggcatgactgccatcatatgttcacttaattctcttaccttaattttgtag