Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag

Basic information

species Glycine max
transcript GLYMA10G06740.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaac--acgaatgaatgtttactgatgtattgattttttgctgtacag---------------
| |||||||||||   |||  |||| ||||| || ||| ||||||||||||| || || |||||||||||||| || || ||||||    |  |   ||  |  || |  | || |   || || ||| |  | |||  ||||  ||   ||     | ||| || |  ||||||| | |||   |   ||                
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctg-ttgattgcc-gtgttcttaaaccaatgaacccgctattgtgtaattgtgtattg-tatttcattacgcaacattccgttttgcag

upper sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G002807_T01 (Zea mays), 5'ss of exon 8
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtaca-cgatttattcacaacttctttgactagaa-tgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag
| ||||| |||||   |||| |||| ||||| || ||| |||||||||||||||| ||||||||||||||||| || || ||||||   | |  ||  | |||    ||  | ||    |||  |   |  ||   || ||||  |    |        |    |||    |  ||  |||           
GTTCTGTGAATGCAGCCAACTGTGCGGAGCTAGCAAAGAAAGAAGATATTGATGGTTTTCTTGTTGGTGGTGCCTCTTTGAAGgtatggcaaactaacctcaaacctttgtattacttctgttgtcagtagctgccgtctgtagctctttaaactcctcttgcaactttcatcatgcgtttcc---------

upper sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G852968_T03 (Zea mays), 5'ss of exon 8
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtaca-cgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag
| ||||| |||||   |||| |||| ||||| || ||| |||| ||||| ||||| ||||||||||||||||| || || ||||||   | | |||  | ||| | |||||   | ||| | |||  | |||  |  || ||  |   ||  |     ||  |   | | | |  |  |  |  || |   
GTTCTGTGAATGCAGCCAACTGTGCAGAGCTAGCAAAGAAAGAGGATATCGATGGTTTTCTTGTTGGTGGTGCCTCCTTGAAGgtatggcaaattaacctcaaat-ctttgtacataatctcctttgt-cctgtaccttcta--ttgtcagtagctgctgcctgtagctct-taaagctcatcttgca---

upper sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 5'ss of exon 7
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag
| ||||| ||||   |||||||||| ||||| || ||  ||||||| |||||||||||||||||||||||||| || || |||||| | |     || | | |||  | ||     ||||  || ||   ||||    |||||  | | |  |   |  |||| ||      |                 
GTTCTGTCAATGGAGGCAACAGTGCAGAGCTTGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGTGGTGCCTCCTTGAAGgtaaaagtaaagtttagacctttatggat----atgttgttgatgaatagaa---gtaaagcagctcacactcacctttattgtgactctag---------------

upper sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g01780.t01 (Vitis vinifera), 5'ss of exon 8
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag
| || || |||| ||||||  || | |||||||| || ||||| ||||||||||||||||||||||| |||||||| ||||||||| |   |||| |       |     | ||  |  |  ||     ||| |  |  ||||  || ||  ||||      ||| |   |   |||||  |   |    
GTTCAGTGAATGGGAGCAATTGTTCAGAGCTCGCCAAACAAGAGGATATTGATGGATTTCTTGTTGGCGGTGCTTCCTTAAAGgtatatt-tttactgttgggcttaaaaattaataactagtttga--ctaaaagtaataaagaaaaacttatgataaaaaacttacaaaaaaattttaggagct----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14205769|gb|BG839447.1|BG839447
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|9258593|gb|BE346740.1|BE346740
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATTCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207842342|gb|GD814614.1|GD814614
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193688729|gb|FK629666.1|FK629666
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGT
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGT
EST: gi|193640974|gb|FK593177.1|FK593177
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCCACCATTATC
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATC
EST: gi|213590011|gb|DB981847.1|DB981847
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCAGAAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208048650|gb|GD847553.1|GD847553
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTAC
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTAC
EST: gi|208059099|gb|GD856149.1|GD856149
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193701572|gb|FK639508.1|FK639508
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATACCAAGAAAGTTGC
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT-CCAAGAAAGTTGC
EST: gi|207812676|gb|GD784540.1|GD784540
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193627608|gb|FK576292.1|FK576292
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|8669600|gb|BE190707.1|BE190707
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCGAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208166462|gb|GD960306.1|GD960306
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207736591|gb|GD709418.1|GD709418
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|192305651|gb|FG998351.1|FG998351
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193393474|gb|FK358850.1|FK358850
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTAGA
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTT-G-
EST: gi|208069326|gb|GD872090.1|GD872090
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208217525|gb|GE010755.1|GE010755
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAAGTTTAGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGA-GTTT-GCTACCATTATCAATTCAGTCACATCCAAGAAAGTTG
EST: gi|31466692|gb|CD408720.1|CD408720
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|14205933|gb|BG839611.1|BG839611
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207822289|gb|GD796086.1|GD796086
EST:     AAAGCAAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: AA-GCAA-GAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208031790|gb|GD831270.1|GD831270
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193554073|gb|FK514224.1|FK514224
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGCGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
EST: gi|208330957|gb|GE131796.1|GE131796
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
EST: gi|208252497|gb|GE046117.1|GE046117
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193687832|gb|FK633509.1|FK633509
EST:     GTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTT
genomic: GTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTT
EST: gi|207711640|gb|GD694116.1|GD694116
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACC
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACC
EST: gi|193316902|gb|FK281120.1|FK281120
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208245520|gb|GE048858.1|GE048858
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193461220|gb|FK427233.1|FK427233
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACAT
EST: gi|151401788|gb|EV271601.1|EV271601
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207708602|gb|GD690914.1|GD690914
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|209714415|gb|BW659099.1|BW659099
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|7145968|gb|AW507890.1|AW507890
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAT                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGA
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGA
EST: gi|193681277|gb|FK621669.1|FK621669
EST:     GCAAGAAGATATTGATGGATTTCTTGGTTGGTGGTGCTTCAAGTTAAAG
genomic: GCAAGAAGATATTGATGGATTTCTTG-TTGGTGGTGCTTCA--TTAAAG
EST: gi|208213931|gb|GE014488.1|GE014488
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207778062|gb|GD747113.1|GD747113
EST:     TATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: TATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|193713466|gb|FK651931.1|FK651931
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208341330|gb|GE139012.1|GE139012
EST:     CGAAGCAAGAAGATATTGATGGATTTCT-GTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207825805|gb|GD798594.1|GD798594
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTTGCTACCATTATCAATTCA
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTT-GCTACCATTATCAATTCA
EST: gi|10256070|gb|BE823836.1|BE823836
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207808049|gb|GD779644.1|GD779644
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAA
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAA
EST: gi|208241017|gb|GE038685.1|GE038685
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAA-G                         GGTCCGGAGTTTGCTAC
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTAC
EST: gi|14205825|gb|BG839503.1|BG839503
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|208135010|gb|GD926657.1|GD926657
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
EST: gi|207692130|gb|GD676091.1|GD676091
EST:     CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAG                         GGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG
genomic: CGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatt ... tgctgtacagGGTCCGGAGTTTGCTACCATTATCAATTCAGTCACATCCAAGAAAGTTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaacacgaatgaatgtttactgatgtattgattttttgctgtacag

- - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG