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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGgttagctgactacaattgtatctgtatagatttccatcaatttaaagttgtatctgtgatagatttcttgctgactcttatatgatttttttcatccag

Basic information

species Glycine max
transcript GLYMA10G05870.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05870.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGgttagctgactaca-attgtatctgtatagatttccatcaatttaaagttgtatctgtgatagatttcttgctgactcttatatgatttttttcatccag
|||||||  ||| |||| || |||||||| || ||||||||||||||||| || ||||||||||| |  | | |    | | ||| | | | || |  || | |  ||        |||||  | |||  ||     |       ||  | ||||   | |||
GTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAGgtaatttaagtttggaatctatttct-tggactctcagccacatagg------tctgttcttgatacctaat--ataaaagcattgtcttttgtttacag

upper sequence: GLYMA10G05870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 5'ss of exon 7
GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGgttagctgactacaattgtatctgtatagatttccatcaatttaaagttgtatctgtg-atagatttct-tgctgactcttatatgatttttt-----tcatccag
|||||||| ||| |  ||||||| |||||||| |||||||||||||| ||||| || |||||||| |  ||||||      | |  |  |||||||||||  ||       |||     |   |||||| || | ||   ||| | |     ||||     |  | |||
GTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgactat-----tttaagcttagatttccatttatcctctcctgtgctcatctgtagattactctactagatctaacaaagggttttggtattgcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730524|gb|BM525925.1|BM525925
EST:     CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG                         CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGgttagctgac ... tttcatccagCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT
EST: gi|16346378|gb|BI971973.1|BI971973
EST:     CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG                         CTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGgttagctgac ... tttcatccagCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATT