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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACATATGATGTCAATACCGTGGCAGTAGGAATTGATGTCAAGACAAATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATGgtatgtgtttttttctcatcatattttacgtagttttctttgttctttccatgtatgtttctattctaacatcttctacag

Basic information

species Glycine max
transcript GLYMA10G05560.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305945|gb|CD391148.1|CD391148
EST:     ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATG                         TTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTCCGCTCGGCCAGCGG
genomic: ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATGgtatgtgttt ... tcttctacagTTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTT-GCTCGGCCAGCGG
EST: gi|6071374|gb|AW100761.1|AW100761
EST:     ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATG                         TTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTTGCTCGGCCAGCGGT
genomic: ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATGgtatgtgttt ... tcttctacagTTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTTGCTCGGCCAGCGGT
EST: gi|31467508|gb|CD409536.1|CD409536
EST:     ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATG                         TTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTTGCTCGGCCAGCGGT
genomic: ATGATCTATCATGTCAAACCGCTTAACACCACTAGCAATTTGTTGATATGgtatgtgttt ... tcttctacagTTAGGTAGGGCAAATTTGGATTGAAGACTGAGGTTTTGCTCGGCCAGCGGT