Sequence
atgc intronic sequence ATGC exonic sequenceGTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg...
Basic information
species | Glycine max |
transcript | GLYMA10G04410.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatcttt--ttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg----------------------------------------------------------------------
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GTGGTCACTTGGAGCAATCATGTATGAAATGCTAGTGGGCTATCCCCCATTCTATTCTGATGAGCCTATGACAACTTGCAGAAAGgtgatatatatttttcagacttgcagctatgaatatataatttcttgaccctcatttccactaattccacatttcagtagtctgtaaacaccttttccattatttaagaaaaaataaatcgtgtttgttcctgacattttttttaatttattgtgcccatatgggcacacag
upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg----------
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GTGGTCACTTGGTGCTATCATGTATGAAATGCTTGTGGGGTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGTAGGAAGgtaaactt------gggaatacaactc---attcagattttagtaat-ttctctgtattataagttccaagttcttgggttgtgaattatcattttaccctactctgtaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9986562|gb|BE660670.1|BE660670EST: TGGGATATCCTNCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAN ATAGTCAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
genomic: TGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaaa