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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg...

Basic information

species Glycine max
transcript GLYMA10G04410.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatcttt--ttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg----------------------------------------------------------------------
||||||||||||||| || ||||| |||||||| ||||| ||||| || || ||||||||||| || |||  ||| ||||| ||||| || | |  ||   |||  ||   ||    |   ||  ||  |||||  ||| ||     ||    ||| ||        || |||     |   ||||                                                                       
GTGGTCACTTGGAGCAATCATGTATGAAATGCTAGTGGGCTATCCCCCATTCTATTCTGATGAGCCTATGACAACTTGCAGAAAGgtgatatatatttttcagacttgcagctatgaatatataatttcttgaccctcatttccactaattccacatttcagtagtctgtaaacaccttttccattatttaagaaaaaataaatcgtgtttgttcctgacattttttttaatttattgtgcccatatgggcacacag

upper sequence: GLYMA10G04410.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTACGAAATGCTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttttgaaagaaatgtttcttgtgactaatgcttaattgacattcacttttgtaaagagtacactttctataagtgcaaagtggatcatcattg----------
|||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||| |||| |||||| |||||||||| |||       | |||    ||    | | |   || | | |  ||| || |  || |   | ||  ||||     ||  || |      | |             
GTGGTCACTTGGTGCTATCATGTATGAAATGCTTGTGGGGTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGTAGGAAGgtaaactt------gggaatacaactc---attcagattttagtaat-ttctctgtattataagttccaagttcttgggttgtgaattatcattttaccctactctgtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9986562|gb|BE660670.1|BE660670
EST:     TGGGATATCCTNCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAN                         ATAGTCAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
genomic: TGGGATATCCTCCTTTTTATTCTGATGATCCAATGTTAACATGCAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC