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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattattttttccttgtgttttgcttaccattgactgaaattttaactgaaattgatgtgttggaattttgtttgccgtggatgcag

Basic information

species Glycine max
transcript GLYMA10G00490.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47580.2 (Oryza sativa), 5'ss of exon 7
------------------------------------------------GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattattttttccttgtgttttgcttaccat-tgactgaaattttaactgaaattgatgtgttggaattttgtttgccgtggatgcag
                                                ||||| || |||||||||||||| || || |||||||| |||||||| |||||||||   || | ||     |||| ||||||   |     | || || |  ||| || |  |    |  ||    |||    || | |||||
AGACATCCTGCTTTTACCTGTTGGTGCTTACAGACTTTATCTTTTCAGGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGGgtaaggc-atctgttga--atgttctgcttattttgctttttaacttctccctggaacttgttccataaaacagcgttc-ttgtcg-tgcag

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 8
GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattattttttccttgtgttttgcttaccat-tgactgaaattttaactgaaattgatgtgttggaattttgtttgccgtggatgcag
||||| || |||||||||||||| || || |||||||| |||||||| |||||||||   || | ||     |||| ||||||   |     | || || |  ||| || |  |    |  ||    |||    || | |||||
GTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGGgtaaggc-atctgttga--atgttctgcttattttgctttttaacttctccctggaacttgttccataaaacagcgttc-ttgtcg-tgcag

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G06360.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattattttttccttgtgttttgcttaccattgactgaaattttaactgaaattgatgtgttggaattttgtttgccgtggatgcag
|| ||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||||||| | |   | | |          ||||      |||  |||||| | |    |    || ||     | | ||     ||  | |||
GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGGgtaag-tgacaatatacacaac-----cttagtgcaaactataattttgatt----tcagagtcttaactctctcttcaatttgacttcag

upper sequence: GLYMA10G00490.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0105g00280.t01 (Vitis vinifera), 5'ss of exon 8
GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaaga--ttattttttccttgtgttttgcttaccattgactgaa-attttaactgaaa--ttgatgtgttggaattttg----tttgccgtggatgcag
|| ||||| |||||||| ||| | |||||||| || ||||||||||| ||||||||||  || |||  |  ||||  | |  | |   ||   ||     || | ||| |   ||  | | ||  | ||||     | ||  ||||||| ||
GTAAATGTGAGTGAACTAGGTTTGGTCACACCAGCAGGGAAAGTTGTATGGGgtaagaaattttttactatttgtactattttcattgttttgtgtttgcttcatctgcagcttttttattttttattttttgaattctgtggtggatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333081|gb|FK026410.1|FK026410
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|17963424|gb|BM270173.1|BM270173
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|17400258|gb|BM177032.1|BM177032
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAAC
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAAC
EST: gi|26043857|gb|CA782197.1|CA782197
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|31459134|gb|CD401162.1|CD401162
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|209725840|gb|BW654703.1|BW654703
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGT-GTGTGGG                         GTAA-TACGCTCAGGTCACA
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACA
EST: gi|22932705|gb|BU549844.1|BU549844
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|192329668|gb|FK022934.1|FK022934
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
EST: gi|209725841|gb|BW654704.1|BW654704
EST:     GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGGgtaagattat ... gtggatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAATGATGGTTGTATAAATG