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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 7
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgta-ttgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag
| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||  | ||  ||||  ||||||| || || |||||||| ||||||||||| ||| |||   |     || |  |  |  |||    || | || || | |||  | ||     ||  |||  || |         
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTACCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacctcttctccattttctttaatttcctaaatttcaattttag------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgta-ttgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag
| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||  | ||  ||||  |||| || || || |||||||| ||||||||||| ||| |||   |     || |  |  |  |||    || | || |  | |||  | ||     ||  |||| || |         
TCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCCAATTTCATACCCTTTGTTGCCACCAACTCATCAGCACCATATGTGgtaattgatggcactagccattctttttatagtttagctacctcttctgcattttctttaatttcctaaattttaattttag------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag
| ||||| || ||  | ||||||||| ||||||||||||| |||||||||||||| || ||| | ||  |||||||||| || ||||| || |||||||||||       ||| |  || | |  | ||   ||    || | ||||   ||||    ||||   ||  | |               
TCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCCAGTTTCTTATCCGTTGTTACCTCCAACACATCAACACCATATGTGgtaactaacctgacttgttctttttt-ttgcattaactaccttttgtgtgatttg--taacatgctaaatctcag------------

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgt---caaattttgtcaacagtttatgtttttatctgcactgcag
| || || |||||  ||||||||||| |||| ||||| || ||||| |||  |||  | |||||||| ||| | ||||| || ||||| ||||||||||||||||       |  |   |  |  | | || |   ||| ||  |||    | |||||| |  ||| | ||    ||   |||  | |||
TTTTCCGGAATTTCTTACTTGCTGAGAGAATAATGCGGTCCGCAAACTGTAATCCAATATCTCACCCTATGCTGCCTCCTACGCATCAACATCATATGTGgtatt--caacaagaaccatattcttctgttatgtaaaatgttatgtgtctagattttgact-cagct-at-ccgttgcatgcttttcag

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtattgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag
| || ||||||||  |||| |||||| | || ||||| || | ||||||| | ||  | || || || ||| ||||||| || |||||||||||||||||||||   |||   ||||   ||   |   ||||  | ||     ||||  |  |  | |      |  | |  || |||   | |||
TTTTCCGAAATTTCTTACTAGCTGAGAGGATAATGCGGTCCGGAAATTGTACCCCAATATCACATCCTATGCTACCTCCTACGCATCAGCATCATATGTGgtat---tggacgttatccctagtttgcattttgatgaattgtgtgtctgagctcttta----cctccgctaatagctgttttccag

upper sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 8
TGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGgtat-tgttggtgattatttttatgatatttttttctaaacgtgttgtcaaattttgtcaacagtttatgtttttatctgcactgcag
|||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||| | || ||||| ||||| || || || ||||||||||||||||||||  |  |||  ||  |   || |  ||||| ||          |     ||||     | | | |     |  || ||  ||  ||
TGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCCTATTTCACACCCCATGTTGCCCCCAACTCATCAGCATCATATGTGgtacctactggaaatactagataagtaattttgttaagtgttcaataatccatttgtctcataatgtgc-catgcatgtgtgctatag