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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAATGCAGAGGATATGGTCAAGAGGGATAAATCTGGAAAACCACTTCTAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttgcaaattatgtcagtcattgattagaagtttacatgaattacaatattctctgctgtcaaatttcaatgagttatggatgactagtgggat...

Basic information

species Glycine max
transcript GLYMA09G40690.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134275|gb|AW132668.1|AW132668
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|17964652|gb|BM271384.1|BM271384
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|192321192|gb|FK014282.1|FK014282
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|37994438|gb|CF806184.1|CF806184
EST:     TAGGCCCGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|254346935|gb|GR856657.1|GR856657
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|208141572|gb|GD939120.1|GD939120
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|151397920|gb|EV267793.1|EV267793
EST:     TAGGCAAGGATGGAAAAATTCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|254346385|gb|GR856107.1|GR856107
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|192321191|gb|FK014281.1|FK014281
EST:     GCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: GCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|17401042|gb|BM177824.1|BM177824
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|298181410|gb|HO022849.1|HO022849
EST:     TAGGCAAGGATGGAAAAATTCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|254321595|gb|GR824912.1|GR824912
EST:     AGGCAAGGATGGAAAAATCCAGATTTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGT
genomic: AGGCAAGGATGGAAAAATCCAGATT-CTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGT
EST: gi|14990679|gb|BI316352.1|BI316352
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|254344788|gb|GR855552.1|GR855552
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGAGGTCC
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCC
EST: gi|7235231|gb|AW570560.1|AW570560
EST:     TACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|254346934|gb|GR856656.1|GR856656
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGGATTGGCCCCTGGTGTA-GATTCCG
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGG-ATTGGCCCCTGGTGTAAGATTCCG
EST: gi|26268189|gb|CA819252.1|CA819252
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
EST: gi|17962816|gb|BM269573.1|BM269573
EST:     TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCT                         GTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA
genomic: TAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttg ... gctggtttagGTGCCAATTGCTATTGGTGGTCCCGGATTGGCCCCTGGTGTAAGATTCCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGAATGCAGAGGATATGGTCAAGAGGGATAAATCTGGAAAACCACTTCTAGGCAAGGATGGAAAAATCCAGATTCTTACTTCCCATACTCTTGAGCCTgtaagttttgcaaattatgtcagtcattgattagaagtttacatgaattacaatattctctgctgtcaaatttcaatgagttatggatgactagtgggat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA