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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgatattatattttgctgacatttaaaatcttcagtgtgttaagtatgcactgtgttcttgaagtgacttctaaacatcaattgtctttcatttccattgtccaatag

Basic information

species Glycine max
transcript GLYMA09G39870.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39870.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 8
TTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAGgtgagaaagtgatattatattttgctgacatttaaaatcttcagtgtgttaagtatgcactgtgttcttgaagtgacttctaaacatcaattgtctttcatttccattgtccaatag
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TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAGgttag------------tatttagttgg-atctgctattttatatggatatagtaaa------gcatatgatgtga--tgcagagttctgtttgtgcttatattcat-gtcttatag