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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaatgtgtctttctgtcaatagttaattcatatggtctttatttgtcacttgtcag

Basic information

species Glycine max
transcript GLYMA09G39750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 8
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaatgtgtctttctgtcaatagttaattcatatggtctttatttgtcacttgtcag
 | ||||   ||||||||||| | || || ||||||||| |||| ||||||||||| |||||||| || || |||||||| |||||       | || |   | | ||| ||| |   ||    | | | ||    ||||| | |             ||||||   |   || |||
TTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAGgtagttgaactctgt-ttattatattttttaac-atcattttttttttcagatcaatggctctgattcccaccatttattctccttgtg-cag

upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G120329_T02 (Zea mays), 5'ss of exon 8
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaatgtgtctttct-gtcaatagttaattcatatggtctttatttgtcacttgtcag-
|| ||||   ||||||||||  | || || |  |||||| |||| ||||||||| | |||||||| ||||| || |||||||||||    | || | |    | | ||   ||     |   | |||   ||||  ||  |  |||  ||       || | || |  |  ||| |   
ATAATTACAACAATGCGGACTCTTTACCAAACGTGCAAACTGGTCCATGGTGATTTGAGTGAATACAATATTCTATATTTTGAGgtagtgaacctcatattaaatataccatttccaaacatattgtacttttcaagtttactgttccttatctctatcctgatgtacctattgcctag

upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G24990.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttat--atttcattgattgaatgtgtctttct------gtcaatagttaattcatatggt--ctttatttgtcacttgtcag
 | || |||  ||||||   ||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||        | |     ||||   || || | | ||  |   |  |  ||        ||| ||   |   ||||  |    || | |     |||||||
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTATAACATACTTTATTTTGAGgtgagttttgattctttttctttagggatctcttcggttttacaagggtcacttgaacaaacaagagaagacagatataatgatattgtcttgactttgtcag

upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G37350.1 (Arabidopsis thaliana), 5'ss of exon 8
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaat-gtgtctttctgtcaatagttaattcatatggt--ctttatttgtcacttgtcag
 | || |||  ||||||   ||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||        |||  |  |  |    ||| | |||  || || || |     ||| |   ||   ||||  |    |||| |     || ||||
TTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTAGTGCATGGGGATCTCAGTGAGTATAACATACTTTATTTTGAAgtgagt-tttgatttatctctacaagggtcacttatttgatcgtttcgtggcagcaaaacgaaacaaatataatgatattatcttgactttttcag

upper sequence: GLYMA09G39750.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 5'ss of exon 8
ATTATTATTGCAATGCGGACATTGTATCAGAAATGCAAATTGGTGCATGGTGATCTCAGTGAATATAATATACTTTATTTTGAGgtgaacaccccctttgccagtttatatttcattgattgaatgtgtctttctgtcaatagttaattcatatggtctttatttgtcacttgtcag
|| ||||| ||||||||||| || |||||||| |||||| |||| ||||| || |||||||||||||| |||||||||||||||||   ||       |     || | |||  | ||| |  |  ||| ||   | ||||  ||      |||  |||||  |    | ||| |||
ATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAGgtatgcatttatcgttt---ttcacattgaactgactacacatgtattatggacaatcatt------tataatctttcctc-ctatttgacag