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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGACAGTTGCTGTTACTCCCTTCTGCATTGTGTTTGCTGTGCTTTGGGGAATTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTgtaagaatagttctgttacctttgtattttttgtcaatttttcttacacactggtagttttgattaaaatatagaaatttgtgatccaatcacgagcaat...

Basic information

species Glycine max
transcript GLYMA09G39500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g57710.1 (Oryza sativa), 5'ss of exon 8
ATATCTGACAGTTGCTGTTACTCCCTTCTGCATTGTGTTTGCTGTGCTTTGGGGAATTTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTgtaagaatagttctgttacctttgtattttttgtcaatttttcttacacactggt--agttttgattaaaatatagaaatttgtgatccaatcacgagcaat
||| || ||| | || ||   ||| || |||||||||||||||||  | ||||   ||||||||||  |  | | |||||||||||| |||||||||||||||||   ||||  |||   | |    |     ||||||    | |      |||  | | || ||||| ||   |     |||  ||              
ATACCTTACAATCGCAGTCTGTCCATTTTGCATTGTGTTTGCTGTTATATGGGCTGTTTATCGCCGGATGACCTATGCTTGGATTGGGCAAGATATTCTTgtaagtgaagtttcgtt-tttataccctcaccctcaattgggatgattaggaggttgaatgttaattaacat---ggtgcctgtcttcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193668696|gb|FK608216.1|FK608216
EST:     TTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTT                         GGCATCACATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTC
genomic: TTATCGCCGTGTATCATTTGCTTGGATTGGTCAAGATATTCTTgtaagaatag ... tatatttcagGGCATCACATTGATAATCACAGTTCTTCAGATTGTGCGGATACCAAATCTC