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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGgtaagaatattttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaatacag

Basic information

species Glycine max
transcript GLYMA09G38730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGgtaagaatatt--ttcataatgattgcatgtcttcctgtcccctgaagcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaatacag
| ||||| | ||    |||||||  |||||||||||| || ||||| |||||| | |||||||| || |||||||| |||||| |||||||  | || ||||     |  |  | |||| | |    ||   ||  || |  ||   || || |   |||   |  |||  | | | ||  |  |                      
TTCACATGACAGACGAAGATGCAGTTGGAAAACCTGGAAAAATTGCGTCTTATCTTGTTGTTACCCATCAACATAGCACCATTCAAAGAGCTGTAGACAGgttccgcttctagtccata-ttacaagatacgtttttg-cagcttttgcttcatcccttgagtaatatttgtttcttctattcag----------------------

upper sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 5'ss of exon 8
TGCACATAAAAGGACGAGATGCACGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGgtaagaatattttcataatgattgcatgtct-----tcctgtcccctga-agcctcttaatttgcccagaattcatgtgtcctgatatgcaaagttacttcataaatacag
| ||  ||||||    |||||||| ||| || | |||||| |||||||| ||||| ||||| ||||| |||||||||||||||| ||||||| |||| |||||    |   | || |     ||||| |||     | |    |  ||  ||    |||  | ||   |   | |  | |||| |  || |  |  | |      ||| ||
TCCATTTAAAAGAGGAAGATGCACCTGGGAAGCTTGGGAAGATTGCATCATATGTAGTTGTCACTCATCAACATAGTACCATTAGAAGAGCCGTTGACAGgtagtgcttcatacaaatgagatgcatttctgaaagtacaaggctttgtcaggaatttatgtggctttgttctgacatatcctaaactg-attgccattgttattatatag