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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaactgatcccctgtagatcaatcaacattttctgctttcacgatttggttttgtcttagtttattgtcggctgcattagtagcctttttcctcctacattttttatgtcctttaattttccttctgcag

Basic information

species Glycine max
transcript GLYMA09G38640.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38640.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G36290.1 (Arabidopsis thaliana), 5'ss of exon 9
TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaactgatcccctgtagatcaatcaacattttctgctttca-cgatttggttttgtcttagtttattgtcggctgcattagtagcctttttcctcctacattttttatgtcctttaattttccttctgcag
|| || || ||||| || || ||||| |||||||||||||||||||| || ||||| || ||||||    | ||| |   ||  |   |    | |         ||  || |   |||| ||||  |||   |                                                               
TCCTTCATCTTAACCTTTCTAGCTGAATGGGGTGACCGTAGCCAGATCGCTACAATAGCTgtaagag---tcatctctcatatctagcttcttactaaaattgaccagtgactgacttttatctttttttgaag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735262|gb|BM528663.1|BM528663
EST:     TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA                         CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAAGA
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: gi|18038713|gb|BM307007.1|BM307007
EST:     TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA                         CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: gi|193487115|gb|FK450528.1|FK450528
EST:     GAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA                         CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
genomic: GAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: gi|8402143|gb|BE057777.1|BE057777
EST:     TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA                         CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: gi|208091234|gb|GD889279.1|GD889279
EST:     TAACATTCCTTGCTGA-TGGGGTGACCGTAGCCAGATAGCGACAATTGCA                         CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA